Publications by authors named "Darrell Cockburn"

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Prazmowski can degrade and utilize resistant starch via a set of synergistically acting enzymes.
Tara L Pickens, Darrell W Cockburn

mSphere· January 2024

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Microscopic assessment of the degradation of millet starch granules by endogenous and exogenous enzymes during mashing.
Andrew J Ledley, Gregory R Ziegler, Ryan J Elias, Darrell W Cockburn

Carbohydr Polym· August 2023

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Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions.
Darrell W Cockburn, Casper Wilkens, Birte Svensson

Methods Mol Biol· May 2023

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Surface Plasmon Resonance Analysis for Quantifying Protein-Carbohydrate Interactions.
Marie Sofie Møller, Darrell W Cockburn, Casper Wilkens

Methods Mol Biol· May 2023

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Impact of mashing protocol on the formation of fermentable sugars from millet in gluten-free brewing.
Andrew J Ledley, Ryan J Elias, Darrell W Cockburn

Food Chem· March 2023

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Evaluating the efficacy of non-thermal microbial load reduction treatments of heat labile food components for in vitro fermentation experiments.
Andrew Paff, Darrell W Cockburn

PLoS One· March 2023

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Effect of processing on the anti-inflammatory efficacy of cocoa in a high fat diet-induced mouse model of obesity.
Daphne K Weikart, Vijaya V Indukuri, Kathryn C Racine, Kiana M Coleman, Jasna Kovac, Darrell W Cockburn

J Nutr Biochem· November 2022

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Additional Resistant Starch from One Potato Side Dish per Day Alters the Gut Microbiota but Not Fecal Short-Chain Fatty Acid Concentrations.
Peter DeMartino, Emily A Johnston, Kristina S Petersen, Penny M Kris-Etherton, Darrell W Cockburn

Nutrients· February 2022

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Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases.
Darrell W Cockburn, Ryan Kibler, Haley A Brown, Rebecca Duvall, Sarah Moraïs

J Struct Biol· September 2021

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Fermentation Reveals Changes in Butyrate Production Dependent on Resistant Starch Source and Microbiome Composition.
June Teichmann, Darrell W Cockburn

Front Microbiol· April 2021

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Characterization of Microbial Dynamics and Volatile Metabolome Changes During Fermentation of Chambourcin Hybrid Grapes From Two Pennsylvania Regions.
Hung Li Wang, Helene Hopfer, Darrell W Cockburn, Josephine Wee

Front Microbiol· January 2021

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Resistant starch: impact on the gut microbiome and health.
Peter DeMartino, Darrell W Cockburn

Curr Opin Biotechnol· February 2020

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Structural basis for the flexible recognition of α-glucan substrates by Bacteroides thetaiotaomicron SusG.
Gregory Arnal, Darrell W Cockburn, Harry Brumer, Nicole M Koropatkin

Protein Sci· June 2018

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Novel carbohydrate binding modules in the surface anchored α-amylase of Eubacterium rectale provide a molecular rationale for the range of starches used by this organism in the human gut.
Darrell W Cockburn, Carolyn Suh, Krizia Perez Medina, Rebecca M Duvall, Zdzislaw Wawrzak

Mol Microbiol· January 2018

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Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.
Indrani Mukhopadhya, Sarah Moraïs, Jenny Laverde-Gomez, Paul O Sheridan, Alan W Walker, Darrell Cockburn

Environ Microbiol· January 2018

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Using Carbohydrate Interaction Assays to Reveal Novel Binding Sites in Carbohydrate Active Enzymes.
Darrell Cockburn, Casper Wilkens, Adiphol Dilokpimol, Hiroyuki Nakai, Anna Lewińska

PLoS One· July 2017

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Affinity Electrophoresis for Analysis of Catalytic Module-Carbohydrate Interactions.
Darrell Cockburn, Casper Wilkens, Birte Svensson

Methods Mol Biol· April 2017

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Lysozyme activity of the Ruminococcus champanellensis cellulosome.
Sarah Moraïs, Darrell W Cockburn, Yonit Ben-David, Nicole M Koropatkin, Eric C Martens

Environ Microbiol· December 2016

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Polysaccharide Degradation by the Intestinal Microbiota and Its Influence on Human Health and Disease.
Darrell W Cockburn, Nicole M Koropatkin

J Mol Biol· August 2016

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An efficient arabinoxylan-debranching α-L-arabinofuranosidase of family GH62 from Aspergillus nidulans contains a secondary carbohydrate binding site.
Casper Wilkens, Susan Andersen, Bent O Petersen, An Li, Marta Busse-Wicher, Darrell Cockburn

Appl Microbiol Biotechnol· July 2016

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The Sus operon: a model system for starch uptake by the human gut Bacteroidetes.
Matthew H Foley, Darrell W Cockburn, Nicole M Koropatkin

Cell Mol Life Sci· July 2016

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Surface binding sites in amylase have distinct roles in recognition of starch structure motifs and degradation.
Darrell Cockburn, Morten M Nielsen, Camilla Christiansen, Joakim M Andersen, Julie B Rannes

Int J Biol Macromol· April 2015

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Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Darrell W Cockburn, Nicole I Orlovsky, Matthew H Foley, Kurt J Kwiatkowski, Constance M Bahr

Mol Microbiol· January 2015

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A bacterial glucanotransferase can replace the complex maltose metabolism required for starch to sucrose conversion in leaves at night.
Christian Ruzanski, Julia Smirnova, Martin Rejzek, Darrell Cockburn, Henriette L Pedersen

J Biol Chem· October 2013

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Modulating the pH-activity profile of cellulase A from Cellulomonas fimi by replacement of surface residues.
Darrell W Cockburn, Anthony J Clarke

Protein Eng Des Sel· May 2011

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