Publications by authors named "Darrell R Davis"

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Probing the influence of hypermodified residues within the tRNA3(Lys) anticodon stem loop interacting with the A-loop primer sequence from HIV-1.
Rodrigo Galindo-Murillo, Darrell R Davis, Thomas E Cheatham

Biochim Biophys Acta· March 2016

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Structural and energetic analysis of 2-aminobenzimidazole inhibitors in complex with the hepatitis C virus IRES RNA using molecular dynamics simulations.
Niel M Henriksen, Hamed S Hayatshahi, Darrell R Davis, Thomas E Cheatham

J Chem Inf Model· June 2014

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Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure.
Niel M Henriksen, Darrell R Davis, Thomas E Cheatham

J Biomol NMR· August 2012

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Therapeutic targeting of HCV internal ribosomal entry site RNA.
Darrell R Davis, Punit P Seth

Antivir Chem Chemother· May 2011

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Measuring antiviral activity of benzimidazole molecules that alter IRES RNA structure with an infectious hepatitis C virus chimera expressing Renilla luciferase.
Shuanghu Liu, Cassie A Nelson, Li Xiao, Ling Lu, Punit P Seth, Darrell R Davis

Antiviral Res· January 2011

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Inhibitor-induced structural change in the HCV IRES domain IIa RNA.
Ryan B Paulsen, Punit P Seth, Eric E Swayze, Richard H Griffey, Jack J Skalicky, Darrell R Davis

Proc Natl Acad Sci U S A· April 2010

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NMR-based mapping of disulfide bridges in cysteine-rich peptides: application to the mu-conotoxin SxIIIA.
Aleksandra Walewska, Jack J Skalicky, Darrell R Davis, Min-Min Zhang, Estuardo Lopez-Vera

J Am Chem Soc· October 2008

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Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNALys recognition.
Daniel Klaiman, Michal Amitsur, Shani Blanga-Kanfi, Michal Chai, Darrell R Davis

Nucleic Acids Res· September 2007

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A novel method for sequence placement of modified nucleotides in mixtures of transfer RNA.
Tracy M Wagner, Vinod Nair, Rebecca Guymon, Steven C Pomerantz, Pamela F Crain, Darrell R Davis

Nucleic Acids Symp Ser (Oxf)· July 2007

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Structural effects of hypermodified nucleosides in the Escherichia coli and human tRNALys anticodon loop: the effect of nucleosides s2U, mcm5U, mcm5s2U, mnm5s2U, t6A, and ms2t6A.
Philippe C Durant, Ashok C Bajji, Mallikarjun Sundaram, Raju K Kumar, Darrell R Davis

Biochemistry· June 2005

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Introduction of hypermodified nucleotides in RNA.
Darrell R Davis, Ashok C Bajji

Methods Mol Biol· November 2004

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Ubiquitin interactions of NZF zinc fingers.
Steven L Alam, Ji Sun, Marielle Payne, Brett D Welch, B Kelly Blake, Darrell R Davis

EMBO J· April 2004

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Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.
Bin Wang, Steven L Alam, Hemmo H Meyer, Marielle Payne, Timothy L Stemmler, Darrell R Davis

J Biol Chem· May 2003

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An RNA complex of the HIV-1 A-loop and tRNA(Lys,3) is stabilized by nucleoside modifications.
Ashok C Bajji, Mallikarjun Sundaram, David G Myszka, Darrell R Davis

J Am Chem Soc· December 2002

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Structure of the Tsg101 UEV domain in complex with the PTAP motif of the HIV-1 p6 protein.
Owen Pornillos, Steven L Alam, Darrell R Davis, Wesley I Sundquist

Nat Struct Biol· November 2002

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Synthesis of the tRNA(Lys,3) anticodon stem-loop domain containing the hypermodified ms2t6A nucleoside.
Ashok C Bajji, Darrell R Davis

J Org Chem· July 2002

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Structure and functional interactions of the Tsg101 UEV domain.
Owen Pornillos, Steven L Alam, Rebecca L Rich, David G Myszka, Darrell R Davis

EMBO J· May 2002

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Structural features of tRNALys favored by anticodon nuclease as inferred from reactivities of anticodon stem and loop substrate analogs.
Yue Jiang, Shani Blanga, Michal Amitsur, Roberto Meidler, Eli Krivosheyev, Darrell R Davis

J Biol Chem· February 2002

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