Publications by authors named "David A Liberles"

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Perspectives on Orthology During the Quest for Orthologs.
Natasha Glover, David A Liberles

J Mol Evol· November 2025

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Understanding Functional Evolution in Orthologs and Paralogs.
Maeva Perez, Katherine Hurm, David A Liberles

J Mol Evol· October 2025

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Quest for Orthologs in the era of Data Deluge and AI: Challenges and Innovations in Orthology Prediction and Data Integration.
Sina Majidian, Armin Hadziahmetovic, Felix Langschied, Stefano Pascarelli, Silvia Prieto-Baños, David A Liberles

J Mol Evol· October 2025

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SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic molecules.
Alexis L Tang, David A Liberles

BMC Bioinformatics· October 2025

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2025 joint BMC ecology and evolution and BMC zoology image competition: the winning images.
Jennifer Harman, Brock Fenton, David Ferrier, Christy A Hipsley, David A Liberles

BMC Ecol Evol· August 2025

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Models for the retention of duplicate genes and their biological underpinnings.
Raquel Assis, Gavin Conant, Barbara Holland, David A Liberles, Malgorzata M O'Reilly

F1000Res· July 2025

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PEMPS: a phylogenetic software tool to model the evolution of metabolic pathways.
Nicholas S McCloskey, Ayna Mammedova, David A Liberles

BMC Bioinformatics· July 2024

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Expectations of duplicate gene retention under the gene duplicability hypothesis.
Amanda E Wilson, David A Liberles

BMC Ecol Evol· December 2023

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A Genomic Conceptualization of Species.
David A Liberles

J Mol Evol· August 2023

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2023 BMC Ecology and Evolution image competition: the winning images.
Jennifer Harman, Christy A Hipsley, Luke M Jacobus, David A Liberles, Josef Settele

BMC Ecol Evol· August 2023

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Highly Abundant Proteins Are Highly Thermostable.
Agusto R Luzuriaga-Neira, Andrew M Ritchie, Bryan L Payne, Oliver Carrillo-Parramon, David A Liberles

Genome Biol Evol· July 2023

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Dosage balance acts as a time-dependent selective barrier to subfunctionalization.
Amanda E Wilson, David A Liberles

BMC Ecol Evol· May 2023

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The Memory Problem for Neutral Mutational Models of Evolution.
David A Liberles

J Mol Evol· February 2023

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2022 Zuckerkandl Prize.
David A Liberles, David Alvarez-Ponce, Michelle M Meyer, Bui Quang Minh, Joana C Silva

J Mol Evol· February 2023

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WGDTree: a phylogenetic software tool to examine conditional probabilities of retention following whole genome duplication events.
C Nicholas Henry, Kathryn Piper, Amanda E Wilson, John L Miraszek, Claire S Probst, David A Liberles

BMC Bioinformatics· November 2022

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Nucleobases in Meteorites to Nucleobases in RNA and DNA?
Ramanarayanan Krishnamurthy, Aaron D Goldman, David A Liberles, Karyn L Rogers, Yitzhak Tor

J Mol Evol· October 2022

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2022 BMC Ecology and Evolution image competition: the winning images.
Jennifer Harman, Christy A Hipsley, Luke M Jacobus, David A Liberles, Josef Settele

BMC Ecol Evol· August 2022

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Detecting Selection on Segregating Gene Duplicates in a Population.
Tristan L Stark, Rebecca S Kaufman, Maria A Maltepes, Peter B Chi, David A Liberles

J Mol Evol· October 2021

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Characterizing Amino Acid Substitution with Complete Linkage of Sites on a Lineage.
Tristan L Stark, David A Liberles

Genome Biol Evol· October 2021

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Correction to: Inaugural BMC Ecology and Evolution image competition: the winning images.
Jennifer L Harman, Alison L Cuff, Josef Settele, Luke M Jacobus, David A Liberles

BMC Ecol Evol· September 2021

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Inaugural BMC Ecology and Evolution image competition: the winning images.
Jennifer L Harman, Alison L Cuff, Josef Settele, Luke M Jacobus, David A Liberles

BMC Ecol Evol· August 2021

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Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and Beyond.
Avery G A Selberg, Eric A Gaucher, David A Liberles

J Mol Evol· April 2021

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The Journal of Molecular Evolution Turns 50.
Aaron D Goldman, David A Liberles

J Mol Evol· April 2021

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Inferring the number and position of changes in selective regime in a non-equilibrium mutation-selection framework.
Andrew M Ritchie, Tristan L Stark, David A Liberles

BMC Ecol Evol· March 2021

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2020 Zuckerkandl Prize.
David A Liberles

J Mol Evol· February 2021

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