Publications by authors named "David A Rand"

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TimeTeller: A tool to probe the circadian clock as a multigene dynamical system.
Denise Vlachou, Maria Veretennikova, Laura Usselmann, Vadim Vasilyev, Sascha Ott, David A Rand

PLoS Comput Biol· February 2024

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Statistically derived geometrical landscapes capture principles of decision-making dynamics during cell fate transitions.
Meritxell Sáez, Robert Blassberg, Elena Camacho-Aguilar, Eric D Siggia, David A Rand

Cell Syst· January 2022

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Geometry of gene regulatory dynamics.
David A Rand, Archishman Raju, Meritxell Sáez, Francis Corson, Eric D Siggia

Proc Natl Acad Sci U S A· September 2021

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Quantifying cell transitions in C. elegans with data-fitted landscape models.
Elena Camacho-Aguilar, Aryeh Warmflash, David A Rand

PLoS Comput Biol· June 2021

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Multiplexing information flow through dynamic signalling systems.
Giorgos Minas, Dan J Woodcock, Louise Ashall, Claire V Harper, Michael R H White, David A Rand

PLoS Comput Biol· August 2020

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Disentangling juxtacrine from paracrine signalling in dynamic tissue.
Hiroshi Momiji, Kirsty L Hassall, Karen Featherstone, Anne V McNamara, Amanda L Patist, David A Rand

PLoS Comput Biol· June 2019

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Parameter sensitivity analysis for biochemical reaction networks.
Giorgos Minas, David A Rand

Math Biosci Eng· May 2019

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Asymmetry between Activation and Deactivation during a Transcriptional Pulse.
Lee S S Dunham, Hiroshi Momiji, Claire V Harper, Polly J Downton, Kirsty Hey, David A Rand

Cell Syst· December 2017

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Inferring transcriptional logic from multiple dynamic experiments.
Giorgos Minas, Dafyd J Jenkins, David A Rand, Bärbel Finkenstädt

Bioinformatics· November 2017

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Long-time analytic approximation of large stochastic oscillators: Simulation, analysis and inference.
Giorgos Minas, David A Rand

PLoS Comput Biol· July 2017

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ReTrOS: a MATLAB toolbox for reconstructing transcriptional activity from gene and protein expression data.
Giorgos Minas, Hiroshi Momiji, Dafyd J Jenkins, Maria J Costa, David A Rand

BMC Bioinformatics· June 2017

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Systems Chronotherapeutics.
Annabelle Ballesta, Pasquale F Innominato, Robert Dallmann, David A Rand, Francis A Lévi

Pharmacol Rev· April 2017

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Signal transduction controls heterogeneous NF-κB dynamics and target gene expression through cytokine-specific refractory states.
Antony Adamson, Christopher Boddington, Polly Downton, William Rowe, James Bagnall, David A Rand

Nat Commun· July 2016

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Reconstruction of Cell Surface Densities of Ion Pumps, Exchangers, and Channels from mRNA Expression, Conductance Kinetics, Whole-Cell Calcium, and Current-Clamp Voltage Recordings, with an Application to Human Uterine Smooth Muscle Cells.
Jolene Atia, Conor McCloskey, Anatoly S Shmygol, David A Rand, Hugo A van den Berg

PLoS Comput Biol· April 2016

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PeTTSy: a computational tool for perturbation analysis of complex systems biology models.
Mirela Domijan, Paul E Brown, Boris V Shulgin, David A Rand

BMC Bioinformatics· March 2016

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Spatially coordinated dynamic gene transcription in living pituitary tissue.
Karen Featherstone, Kirsty Hey, Hiroshi Momiji, Anne V McNamara, Amanda L Patist, David A Rand

Elife· February 2016

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Time-Series Transcriptomics Reveals That AGAMOUS-LIKE22 Affects Primary Metabolism and Developmental Processes in Drought-Stressed Arabidopsis.
Ulrike Bechtold, Christopher A Penfold, Dafyd J Jenkins, Roxane Legaie, Jonathan D Moore, Silvere R M Vialet-Chabrand, David A Rand

Plant Cell· February 2016

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A stochastic transcriptional switch model for single cell imaging data.
Kirsty L Hey, Hiroshi Momiji, Karen Featherstone, Julian R E Davis, Michael R H White, David A Rand

Biostatistics· October 2015

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Frequency Modulated Translocational Oscillations of Nrf2 Mediate the Antioxidant Response Element Cytoprotective Transcriptional Response.
Mingzhan Xue, Hiroshi Momiji, Naila Rabbani, Guy Barker, Till Bretschneider, David A Rand

Antioxid Redox Signal· September 2015

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Frequency modulated translocational oscillations of Nrf2, a transcription factor functioning like a wireless sensor.
Mingzhan Xue, Hiroshi Momiji, Naila Rabbani, Till Bretschneider, David A Rand

Biochem Soc Trans· August 2015

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Coupling between the Circadian Clock and Cell Cycle Oscillators: Implication for Healthy Cells and Malignant Growth.
Celine Feillet, Gijsbertus T J van der Horst, Francis Levi, David A Rand, Franck Delaunay

Front Neurol· June 2015

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Using constraints and their value for optimization of large ODE systems.
Mirela Domijan, David A Rand

J R Soc Interface· March 2015

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The inwardly rectifying K+ channel KIR7.1 controls uterine excitability throughout pregnancy.
Conor McCloskey, Cara Rada, Elizabeth Bailey, Samantha McCavera, Hugo A van den Berg, David A Rand

EMBO Mol Med· September 2014

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Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle.
Céline Feillet, Peter Krusche, Filippo Tamanini, Roel C Janssens, Mike J Downey, David A Rand

Proc Natl Acad Sci U S A· July 2014

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Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response.
Kate Sidaway-Lee, Maria J Costa, David A Rand, Bärbel Finkenstadt, Steven Penfield

Genome Biol· March 2014

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