Publications by authors named "David Ackerman"

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Vimentin filament transport and organization revealed by single-particle tracking and 3D FIB-SEM.
Bhuvanasundar Renganathan, Andrew S Moore, Wei-Hong Yeo, Alyson Petruncio, David Ackerman

J Cell Biol· April 2025

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Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM.
Bhuvanasundar Renganathan, Andrew Moore, Wei-Hong Yeo, Alyson Petruncio, David Ackerman

bioRxiv· June 2024

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Author Correction: Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Navaneetha Krishnan Bharathan, William Giang, Coryn L Hoffman, Jesse S Aaron, Satya Khuon, David Ackerman

Nat Cell Biol· April 2024

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DrugBank 6.0: the DrugBank Knowledgebase for 2024.
Craig Knox, Mike Wilson, Christen M Klinger, Mark Franklin, Eponine Oler, David Ackerman

Nucleic Acids Res· January 2024

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Architecture and dynamics of a desmosome-endoplasmic reticulum complex.
Navaneetha Krishnan Bharathan, William Giang, Coryn L Hoffman, Jesse S Aaron, Satya Khuon, David Ackerman

Nat Cell Biol· June 2023

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Visualizing synaptic dopamine efflux with a 2D composite nanofilm.
Chandima Bulumulla, Andrew T Krasley, Ben Cristofori-Armstrong, William C Valinsky, Deepika Walpita, David Ackerman

Elife· July 2022

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An End-To-End Pipeline for Fully Automatic Morphological Quantification of Mouse Brain Structures From MRI Imagery.
Shahinur Alam, Tae-Yeon Eom, Jeffrey Steinberg, David Ackerman, J Eric Schmitt

Front Bioinform· June 2022

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ESCRT-mediated membrane repair protects tumor-derived cells against T cell attack.
Alex T Ritter, Gleb Shtengel, C Shan Xu, Aubrey Weigel, David P Hoffman, David Ackerman

Science· April 2022

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Whole-cell organelle segmentation in volume electron microscopy.
Larissa Heinrich, Davis Bennett, David Ackerman, Woohyun Park, John Bogovic

Nature· November 2021

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Membrane Bending Moduli of Coexisting Liquid Phases Containing Transmembrane Peptide.
Rebecca D Usery, Thais A Enoki, Sanjula P Wickramasinghe, Vanessa P Nguyen, David G Ackerman

Biophys J· July 2018

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Membrane Bending Moduli of Coexisting Liquid Phases Containing Transmembrane Peptide.
Rebecca D Usery, Thais A Enoki, Sanjula P Wickramasinghe, Vanessa P Nguyen, David G Ackerman

Biophys J· May 2018

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Line Tension Controls Liquid-Disordered + Liquid-Ordered Domain Size Transition in Lipid Bilayers.
Rebecca D Usery, Thais A Enoki, Sanjula P Wickramasinghe, Michael D Weiner, Wen-Chyan Tsai, David G Ackerman

Biophys J· April 2017

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A real-time phenotyping framework using machine learning for plant stress severity rating in soybean.
Hsiang Sing Naik, Jiaoping Zhang, Alec Lofquist, Teshale Assefa, Soumik Sarkar, David Ackerman

Plant Methods· April 2017

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Tracer counterpermeation analysis of diffusivity in finite-length nanopores with and without single-file dynamics.
David M Ackerman, James W Evans

Phys Rev E· January 2017

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Effects of Transmembrane α-Helix Length and Concentration on Phase Behavior in Four-Component Lipid Mixtures: A Molecular Dynamics Study.
David G Ackerman, Gerald W Feigenson

J Phys Chem B· May 2016

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Lipid bilayers: clusters, domains and phases.
David G Ackerman, Gerald W Feigenson

Essays Biochem· October 2015

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Kinetic Monte Carlo Simulation of Statistical Mechanical Models and Coarse-Grained Mesoscale Descriptions of Catalytic Reaction-Diffusion Processes: 1D Nanoporous and 2D Surface Systems.
Da-Jiang Liu, Andres Garcia, Jing Wang, David M Ackerman, Chi-Jen Wang

Chem Rev· June 2015

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Multiscale modeling of four-component lipid mixtures: domain composition, size, alignment, and properties of the phase interface.
David G Ackerman, Gerald W Feigenson

J Phys Chem B· March 2015

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Langevin and fOkker-Planck analyses of inhibited molecular passing processes controlling transport and reactivity in nanoporous materials.
Chi-Jen Wang, David M Ackerman, Igor I Slowing, James W Evans

Phys Rev Lett· July 2014

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Limited perturbation of a DPPC bilayer by fluorescent lipid probes: a molecular dynamics study.
David G Ackerman, Frederick A Heberle, Gerald W Feigenson

J Phys Chem B· May 2013

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Controlling reactivity of nanoporous catalyst materials by tuning reaction product-pore interior interactions: statistical mechanical modeling.
Jing Wang, David M Ackerman, Victor S-Y Lin, Marek Pruski, James W Evans

J Chem Phys· April 2013

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Generalized hydrodynamic treatment of the interplay between restricted transport and catalytic reactions in nanoporous materials.
David M Ackerman, Jing Wang, James W Evans

Phys Rev Lett· June 2012

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Catalytic conversion reactions mediated by single-file diffusion in linear nanopores: hydrodynamic versus stochastic behavior.
David M Ackerman, Jing Wang, Joseph H Wendel, Da-Jiang Liu, Marek Pruski

J Chem Phys· March 2011

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