Publications by authors named "David B Bernstein"

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Evaluating E. coli genome-scale metabolic model accuracy with high-throughput mutant fitness data.
David B Bernstein, Batu Akkas, Morgan N Price, Adam P Arkin

Mol Syst Biol· December 2023

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Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions.
Charles Jo, David B Bernstein, Natalie Vaisman, Horacio M Frydman, Daniel Segrè

mSystems· April 2023

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Enhancing Microbiome Research through Genome-Scale Metabolic Modeling.
Nana Y D Ankrah, David B Bernstein, Matthew Biggs, Maureen Carey, Melinda Engevik

mSystems· December 2021

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A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS).
Ilija Dukovski, Djordje Bajić, Jeremy M Chacón, Michael Quintin, Jean C C Vila, David B Bernstein

Nat Protoc· November 2021

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Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure.
Devlin Moyer, Alan R Pacheco, David B Bernstein, Daniel Segrè

J Mol Evol· August 2021

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Addressing uncertainty in genome-scale metabolic model reconstruction and analysis.
David B Bernstein, Snorre Sulheim, Eivind Almaas, Daniel Segrè

Genome Biol· February 2021

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Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome.
David B Bernstein, Floyd E Dewhirst, Daniel Segrè

Elife· June 2019

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Coordinated regulation of acid resistance in Escherichia coli.
Patricia Aquino, Brent Honda, Suma Jaini, Anna Lyubetskaya, Krutika Hosur, David B Bernstein

BMC Syst Biol· January 2017

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Controlling mechanical ventilation in acute respiratory distress syndrome with fuzzy logic.
Binh Nguyen, David B Bernstein, Jason H T Bates

J Crit Care· August 2014

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Elucidating the fuzziness in physician decision making in ARDS.
David B Bernstein, Binh Nguyen, Gilman B Allen, Jason H T Bates

J Clin Monit Comput· June 2013

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