Publications by authors named "David B Neale"

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A genome sequence for the threatened whitebark pine.
David B Neale, Aleksey V Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee

G3 (Bethesda)· May 2024

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A Genome Sequence for the Threatened Whitebark Pine.
David B Neale, Aleksey V Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee

bioRxiv· November 2023

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Probing the dark matter of environmental associations yields novel insights into the architecture of adaptation.
Andrew J Eckert, David B Neale

New Phytol· March 2023

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Genome-wide association analysis and pathway enrichment provide insights into the genetic basis of photosynthetic responses to drought stress in Persian walnut.
Mohammad M Arab, Patrick J Brown, Rostam Abdollahi-Arpanahi, Seyed Sajad Sohrabi, Hossein Askari, David B Neale

Hortic Res· August 2022

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Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera.
Cynthia Webster, Laura Figueroa-Corona, Iván David Méndez-González, Lluvia Álvarez-Soto, David B Neale

Ecol Evol· February 2022

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Genome-wide association identifies candidate genes for drought tolerance in coast redwood and giant sequoia.
Amanda R De La Torre, Manoj K Sekhwal, Daniela Puiu, Steven L Salzberg, Alison D Scott, David B Neale

Plant J· January 2022

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Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin.
David B Neale, Aleksey V Zimin, Sumaira Zaman, Alison D Scott, Bikash Shrestha

G3 (Bethesda)· January 2022

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Selective Sweeps and Polygenic Adaptation Drive Local Adaptation along Moisture and Temperature Gradients in Natural Populations of Coast Redwood and Giant Sequoia.
Amanda R De La Torre, Manoj K Sekhwal, David B Neale

Genes (Basel)· November 2021

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Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir.
Amanda R De La Torre, Benjamin Wilhite, Daniela Puiu, John Bradley St Clair, Marc W Crepeau, David B Neale

Genes (Basel)· January 2021

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Genetic Analysis of Walnut ( L.) Pellicle Pigment Variation Through a Novel, High-Throughput Phenotyping Platform.
Gina M Sideli, Peter McAtee, Annarita Marrano, Brian J Allen, Patrick J Brown, David B Neale

G3 (Bethesda)· December 2020

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A Reference Genome Sequence for Giant Sequoia.
Alison D Scott, Aleksey V Zimin, Daniela Puiu, Rachael Workman, Monica Britton, David B Neale

G3 (Bethesda)· November 2020

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Genomic basis of white pine blister rust quantitative disease resistance and its relationship with qualitative resistance.
Matthew Weiss, Richard A Sniezko, Daniela Puiu, Marc W Crepeau, Kristian Stevens, David B Neale

Plant J· October 2020

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Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Collection.
Sara Montanari, Joseph Postman, Nahla V Bassil, David B Neale

G3 (Bethesda)· September 2020

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Quantitative phenotyping of shell suture strength in walnut (Juglans regia L.) enhances precision for detection of QTL and genome-wide association mapping.
Gina M Sideli, Annarita Marrano, Sara Montanari, Charles A Leslie, Brian J Allen, David B Neale

PLoS One· July 2020

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High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome.
Annarita Marrano, Monica Britton, Paulo A Zaini, Aleksey V Zimin, Rachael E Workman, David B Neale

Gigascience· May 2020

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Comparative genomics of six Juglans species reveals disease-associated gene family contractions.
Alexander J Trouern-Trend, Taylor Falk, Sumaira Zaman, Madison Caballero, David B Neale

Plant J· April 2020

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Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.).
Anthony Bernard, Annarita Marrano, Armel Donkpegan, Patrick J Brown, Charles A Leslie, David B Neale

BMC Genomics· March 2020

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Combining phenotype, genotype, and environment to uncover genetic components underlying water use efficiency in Persian walnut.
Mohammad M Arab, Annarita Marrano, Rostam Abdollahi-Arpanahi, Charles A Leslie, Hao Cheng, David B Neale

J Exp Bot· January 2020

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Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.).
Gareth Linsmith, Stephane Rombauts, Sara Montanari, Cecilia H Deng, Jean-Marc Celton, David B Neale

Gigascience· December 2019

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Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa.
Fernando P Guerra, Haktan Suren, Jason Holliday, James H Richards, Oliver Fiehn, David B Neale

BMC Genomics· November 2019

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Environmental Genome-Wide Association Reveals Climate Adaptation Is Shaped by Subtle to Moderate Allele Frequency Shifts in Loblolly Pine.
Amanda R De La Torre, Benjamin Wilhite, David B Neale

Genome Biol Evol· October 2019

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Deciphering of the Genetic Control of Phenology, Yield, and Pellicle Color in Persian Walnut ( L.).
Annarita Marrano, Gina M Sideli, Charles A Leslie, Hao Cheng, David B Neale

Front Plant Sci· September 2019

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A Reference Genome Sequence for the European Silver Fir ( Mill.): A Community-Generated Genomic Resource.
Elena Mosca, Fernando Cruz, Jèssica Gómez-Garrido, Luca Bianco, Christian Rellstab, David B Neale

G3 (Bethesda)· July 2019

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Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization.
Sara Montanari, Luca Bianco, Brian J Allen, Pedro J Martínez-García, Nahla V Bassil, David B Neale

BMC Genomics· May 2019

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Genome-wide patterns of population structure and association mapping of nut-related traits in Persian walnut populations from Iran using the Axiom J. regia 700K SNP array.
Mohammad Mehdi Arab, Annarita Marrano, Rostam Abdollahi-Arpanahi, Charles A Leslie, Hossein Askari, David B Neale

Sci Rep· April 2019

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