Publications by authors named "David Bernick"

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Altering under-represented DNA sequences elevates bacterial transformation efficiency.
Shuai Hu, Stefani Giacopazzi, Ryan Modlin, Kevin Karplus, David L Bernick

mBio· December 2023

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The Data and Research Center: Creating a Secure, Scalable, and Sustainable Ecosystem for Biomedical Research.
Kelsey R Mayo, Melissa A Basford, Robert J Carroll, Moira Dillon, Heather Fullen, David Bernick

Annu Rev Biomed Data Sci· August 2023

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sfkit: a web-based toolkit for secure and federated genomic analysis.
Simon Mendelsohn, David Froelicher, Denis Loginov, David Bernick, Bonnie Berger

Nucleic Acids Res· July 2023

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GA4GH Passport standard for digital identity and access permissions.
Craig Voisin, Mikael Linden, Stephanie O M Dyke, Sarion R Bowers, Pinar Alper, David Bernick

Cell Genom· November 2021

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GA4GH: International policies and standards for data sharing across genomic research and healthcare.
Heidi L Rehm, Angela J H Page, Lindsay Smith, Jeremy B Adams, Gil Alterovitz, David Bernick

Cell Genom· November 2021

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Assembly of Using Ultra-Long Reads.
McKenna Hicks, Thuy-Khanh Tran-Dao, Logan Mulroney, David L Bernick

Front Microbiol· April 2021

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Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species.
Lauren M Lui, Andrew V Uzilov, David L Bernick, Andrea Corredor, Todd M Lowe

Nucleic Acids Res· June 2018

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Fallacy of the Unique Genome: Sequence Diversity within Single Strains.
Jenny L Draper, Lori M Hansen, David L Bernick, Samar Abedrabbo, Jason G Underwood

mBio· February 2017

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Capture, Unfolding, and Detection of Individual tRNA Molecules Using a Nanopore Device.
Andrew M Smith, Robin Abu-Shumays, Mark Akeson, David L Bernick

Front Bioeng Biotechnol· July 2015

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IscR is essential for yersinia pseudotuberculosis type III secretion and virulence.
Halie K Miller, Laura Kwuan, Leah Schwiesow, David L Bernick, Erin Mettert

PLoS Pathog· June 2014

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Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species.
David L Bernick, Patrick P Dennis, Lauren M Lui, Todd M Lowe

Front Microbiol· October 2012

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Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum.
David L Bernick, Courtney L Cox, Patrick P Dennis, Todd M Lowe

Front Microbiol· October 2012

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ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases.
Kamrun Zargar, Alison Conrad, David L Bernick, Todd M Lowe, Viktor Stolc

Environ Microbiol· July 2012

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Complete genome sequence of Pyrobaculum oguniense.
David L Bernick, Kevin Karplus, Lauren M Lui, Joanna K C Coker, Julie N Murphy

Stand Genomic Sci· July 2012

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Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features.
David L Bernick, Patrick P Dennis, Matthias Höchsmann, Todd M Lowe

RNA· March 2012

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Discovery of a minimal form of RNase P in Pyrobaculum.
Lien B Lai, Patricia P Chan, Aaron E Cozen, David L Bernick, James W Brown

Proc Natl Acad Sci U S A· December 2010

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Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.
Aaron E Cozen, Matthew T Weirauch, Katherine S Pollard, David L Bernick, Joshua M Stuart

J Bacteriol· February 2009

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