Publications by authors named "David Culley"

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Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research.
Claire Shaw, Charles Brooke, Erik Hawley, Morgan P Connolly, Javier A Garcia, David E Culley

Front Microbiol· November 2020

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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, David Culley

Nat Commun· October 2020

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Transcriptomic analysis of the oleaginous yeast during lipid accumulation on enzymatically treated corn stover hydrolysate.
Kyle R Pomraning, James R Collett, Joonhoon Kim, Ellen A Panisko, David E Culley

Biotechnol Biofuels· June 2019

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Deletion of the KU70 homologue facilitates gene targeting in Lipomyces starkeyi strain NRRL Y-11558.
Ziyu Dai, Kyle R Pomraning, Shuang Deng, Beth A Hofstad, Ellen A Panisko, David E Culley

Curr Genet· February 2019

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Agrobacterium tumefaciens-mediated transformation of oleaginous yeast Lipomyces species.
Ziyu Dai, Shuang Deng, David E Culley, Kenneth S Bruno, Jon K Magnuson

Appl Microbiol Biotechnol· August 2017

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Widespread adenine N6-methylation of active genes in fungi.
Stephen J Mondo, Richard O Dannebaum, Rita C Kuo, Katherine B Louie, Adam J Bewick, David Culley

Nat Genet· June 2017

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The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete.
Stephen B Goodwin, Cassandra B McCorison, Jessica R Cavaletto, David E Culley, Kurt LaButti

Fungal Biol· August 2016

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Complete genome sequence of Methanospirillum hungatei type strain JF1.
Robert P Gunsalus, Lauren E Cook, Bryan Crable, Lars Rohlin, Erin McDonald, David E Culley

Stand Genomic Sci· January 2016

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Increased production of free fatty acids in Aspergillus oryzae by disruption of a predicted acyl-CoA synthetase gene.
Koichi Tamano, Kenneth S Bruno, Hideaki Koike, Tomoko Ishii, Ai Miura, David E Culley

Appl Microbiol Biotechnol· April 2015

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Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30.
Lindsey N Anderson, David E Culley, Beth A Hofstad, Lacie M Chauvigné-Hines, Erika M Zink

Mol Biosyst· December 2013

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Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes.
Koichi Tamano, Kenneth S Bruno, Sue A Karagiosis, David E Culley, Shuang Deng

Appl Microbiol Biotechnol· January 2013

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Identifying and characterizing the most significant β-glucosidase of the novel species Aspergillus saccharolyticus.
Annette Sørensen, Birgitte K Ahring, Mette Lübeck, Wimal Ubhayasekera, Kenneth S Bruno, David E Culley

Can J Microbiol· September 2012

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Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
Mikael R Andersen, Margarita P Salazar, Peter J Schaap, Peter J I van de Vondervoort, David Culley

Genome Res· June 2011

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Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism.
Caroline M Plugge, Johannes C M Scholten, David E Culley, Lei Nie, Fred J Brockman

Microbiology (Reading)· September 2010

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Microbial dynamics in upflow anaerobic sludge blanket (UASB) bioreactor granules in response to short-term changes in substrate feed.
William P Kovacik, Johannes C M Scholten, David Culley, Robert Hickey, Weiwen Zhang

Microbiology (Reading)· August 2010

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Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry.
Nitin Gupta, Kim K Hixson, David E Culley, Richard D Smith, Pavel A Pevzner

Proteomics· August 2010

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The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production.
Jessica R Sieber, David R Sims, Cliff Han, Edwin Kim, Athanasios Lykidis, David E Culley

Environ Microbiol· August 2010

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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.
Stéphane Le Crom, Wendy Schackwitz, Len Pennacchio, Jon K Magnuson, David E Culley

Proc Natl Acad Sci U S A· September 2009

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Environmental genomics reveals a single-species ecosystem deep within Earth.
Dylan Chivian, Eoin L Brodie, Eric J Alm, David E Culley, Paramvir S Dehal

Science· October 2008

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Utilization of DNA as a sole source of phosphorus, carbon, and energy by Shewanella spp.: ecological and physiological implications for dissimilatory metal reduction.
Grigoriy E Pinchuk, Christine Ammons, David E Culley, Shu-Mei W Li, Jeff S McLean

Appl Environ Microbiol· February 2008

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mRNA-targeted fluorescent in situ hybridization (FISH) of Gram-negative bacteria without template amplification or tyramide signal amplification.
James R Coleman, David E Culley, William B Chrisler, Fred J Brockman

J Microbiol Methods· December 2007

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Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants.
Orianna Bretschger, Anna Obraztsova, Carter A Sturm, In Seop Chang, Yuri A Gorby, David E Culley

Appl Environ Microbiol· November 2007

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Integrative analysis of transcriptomic and proteomic data: challenges, solutions and applications.
Lei Nie, Gang Wu, David E Culley, Johannes C M Scholten, Weiwen Zhang

Crit Rev Biotechnol· September 2007

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Comparative transcriptome analysis of Desulfovibrio vulgaris grown in planktonic culture and mature biofilm on a steel surface.
Weiwen Zhang, David E Culley, Lei Nie, Johannes C M Scholten

Appl Microbiol Biotechnol· August 2007

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Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress.
Johannes C M Scholten, David E Culley, Lei Nie, Kyle J Munn, Lely Chow

Biochem Biophys Res Commun· June 2007

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