Publications by authors named "David Duchene"

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Deep learning from videography as a tool for measuring infection in poultry.
Neil Scheidwasser, Louise Ladefoged Poulsen, Prince Ravi Leow, Mark Poulsen Khurana, Maider Iglesias-Carrasco

R Soc Open Sci· October 2025

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Drivers of avian genomic change revealed by evolutionary rate decomposition.
David A Duchêne, Al-Aabid Chowdhury, Jingyi Yang, Maider Iglesias-Carrasco, Josefin Stiller

Nature· May 2025

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Vacuum-assisted renal sheath clears 1 cm of stone faster than non-suction sheath in mini-percutaneous nephrolithotomy.
Lucas B Vergamini, Bristol B Whiles, Amber McMahon, Michael Creswell, Jared Starkey, David A Duchene

World J Urol· May 2025

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Phylo2Vec: A Vector Representation for Binary Trees.
Matthew J Penn, Neil Scheidwasser, Mark P Khurana, David A Duchêne, Christl A Donnelly

Syst Biol· April 2025

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Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala.
Binia De Cahsan, Marcela Sandoval Velasco, Michael V Westbury, David A Duchêne, Mikkel H Strander Sinding

Mol Biol Evol· April 2025

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Distinct evolutionary regimes across domains of the Plasmodium falciparum CSP gene.
Rusul Al-Kaisy, Samir Bhatt, David A Duchêne

Sci Rep· April 2025

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Artificial intelligence for modelling infectious disease epidemics.
Moritz U G Kraemer, Joseph L-H Tsui, Serina Y Chang, Spyros Lytras, Mark P Khurana

Nature· February 2025

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Climate Change and Malaria: A Call for Robust Analytics.
Daniel J Laydon, David L Smith, Kaustubh Chakradeo, Mark P Khurana, Jaffer Okiring, David A Duchene

medRxiv· January 2025

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Bayesian Inference of Phylogenetic Distances: Revisiting the Eigenvalue Approach.
Matthew J Penn, Neil Scheidwasser, Christl A Donnelly, David A Duchêne, Samir Bhatt

Bull Math Biol· January 2025

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Editorial Comment on "Predictors of Same-day Discharge After Single-port Transvesical Enucleation of the Prostate".
David A Duchene

Urology· November 2024

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Holmium:yttrium-aluminium-garnet laser with MOSES technology is more efficient than thulium fibre laser in supine mini-percutaneous nephrolithotomy.
Lucas B Vergamini, Willian Ito, Nicholas Choi B, Holly E Du, Mihaela E Sardiu, David A Duchene

BJU Int· August 2024

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High-resolution epidemiological landscape from  ~290,000 SARS-CoV-2 genomes from Denmark.
Mark P Khurana, Jacob Curran-Sebastian, Neil Scheidwasser, Christian Morgenstern, Morten Rasmussen

Nat Commun· August 2024

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Intrarenal pressure and flow rate profile using LithoVue™ elite: impact of different irrigation systems and working channel instruments.
Lucas B Vergamini, Wilson R Molina, Willian Ito, Aaron Tverye, Quinnlyn Walcott, David A Duchene

World J Urol· July 2024

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The Limits of the Constant-rate Birth-Death Prior for Phylogenetic Tree Topology Inference.
Mark P Khurana, Neil Scheidwasser-Clow, Matthew J Penn, Samir Bhatt, David A Duchêne

Syst Biol· May 2024

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Complexity of avian evolution revealed by family-level genomes.
Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González, David A Duchêne

Nature· May 2024

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ClockstaRX: Testing Molecular Clock Hypotheses With Genomic Data.
David A Duchêne, Sebastián Duchêne, Josefin Stiller, Rasmus Heller, Simon Y W Ho

Genome Biol Evol· April 2024

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Impact of Renal Access Angle and Speed of Nephroscope Retrieval Movements on the Vortex Effect.
Willian E Ito, Dillon J Prokop, Bristol B Whiles, Mihaela E Sardiu, Holly Smith, David A Duchene

Urology· January 2024

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Recanalize ureteral stents with focused ultrasound.
Rohit Singh, Abhirup Samaddar, David Duchene, Stephen Waller, Xinmai Yang

Med Phys· December 2023

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Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees.
Matthew J Penn, Neil Scheidwasser, Joseph Penn, Christl A Donnelly, David A Duchêne

Genome Biol Evol· December 2023

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The Vortex Effect in Minimally Invasive Percutaneous Nephrolithotomy.
Willian E Ito, Dillon J Prokop, Mario C Ito, Bristol B Whiles, Donald A Neff, David A Duchene

Urology· October 2023

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A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea.
Michael V Westbury, Andrea A Cabrera, Alba Rey-Iglesia, Binia De Cahsan, David A Duchêne

Mol Ecol· September 2023

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Optimizing stone harvesting in miniaturized-PCNL: a critical examination of renal access angles, technology, and the role they play in operative efficiency.
Kenneth Schmanke, Willian Ito, Dillon Prokop, Brandon Kannady, Mihaela Sardiu, David Duchene

World J Urol· July 2023

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On the rocks: can urologists identify stone composition based on endoscopic images alone? A worldwide survey of urologists.
Joseph H Randall, Bristol B Whiles, Raphael V Carrera, Willian E Ito, Jeffrey A Thompson, David A Duchene

World J Urol· February 2023

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Cost Implications of Routine Preoperative Blood Typing and Crossmatching Prior to Robot-Assisted Laparoscopic Partial Nephrectomy.
Matthew M Banti, Atiyeh Samadi, Mihaela E Sardiu, Hadley Wyre, Moben Mirza, David Duchene

Urol Pract· September 2022

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Preoperative Optimization of Promotility in Robotic Prostatectomy and Minimally Invasive Kidney Surgery.
Derek Jensen, Alexandra Dahlgren, Katie Glavin, Paul Black, David Duchene

Urol Pract· May 2022

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