Publications by authors named "David Dylus"

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Translocating gut pathobiont induces T17 and IgG3 anti-RNA-directed autoimmunity in mouse and human.
Konrad Gronke, Mytien Nguyen, Helen Fuhrmann, Noemi Santamaria de Souza, Julia Schumacher, David Dylus

Sci Transl Med· February 2025

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The brittle star genome illuminates the genetic basis of animal appendage regeneration.
Elise Parey, Olga Ortega-Martinez, Jérôme Delroisse, Laura Piovani, Anna Czarkwiani, David Dylus

Nat Ecol Evol· August 2024

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Author Correction: A novel antibiotic class targeting the lipopolysaccharide transporter.
Claudia Zampaloni, Patrizio Mattei, Konrad Bleicher, Lotte Winther, Claudia Thäte, David Dylus

Nature· July 2024

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Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree.
David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz

Nat Biotechnol· January 2024

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A novel antibiotic class targeting the lipopolysaccharide transporter.
Claudia Zampaloni, Patrizio Mattei, Konrad Bleicher, Lotte Winther, Claudia Thäte, David Dylus

Nature· January 2024

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Human Th17- and IgG3-associated autoimmunity induced by a translocating gut pathobiont.
Konrad Gronke, Mytien Nguyen, Noemi Santamaria, Julia Schumacher, Yi Yang, David Dylus

bioRxiv· July 2023

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Antibacterial inhibitors targeting the lipoprotein transport pathway.
Maarten Vercruysse, David Dylus

Biochim Biophys Acta Mol Cell Res· June 2023

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Read2Tree: scalable and accurate phylogenetic trees from raw reads.
David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J Sedlazeck, Christophe Dessimoz

bioRxiv· December 2022

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Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop.
Gilbert Greub, Patricia M Palagi, David Dylus, Adrian Egli, Trestan Pillonel

Microbes Infect· July 2021

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FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis.
Anna Czarkwiani, David V Dylus, Luisana Carballo, Paola Oliveri

Development· May 2021

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NGS-Based Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.
David Dylus, Trestan Pillonel, Onya Opota, Daniel Wüthrich, Helena M B Seth-Smith

Front Microbiol· November 2020

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Extracellular matrix gene expression during arm regeneration in Amphiura filiformis.
Cinzia Ferrario, Anna Czarkwiani, David Viktor Dylus, Laura Piovani, Maria Daniela Candia Carnevali

Cell Tissue Res· September 2020

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The phylogenetic range of bacterial and viral pathogens of vertebrates.
Liam P Shaw, Alethea D Wang, David Dylus, Magda Meier, Grega Pogacnik

Mol Ecol· September 2020

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How to build phylogenetic species trees with OMA.
David Dylus, Yannis Nevers, Adrian M Altenhoff, Antoine Gürtler, Christophe Dessimoz

F1000Res· June 2020

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New genome assembly of the barn owl ().
Anne-Lyse Ducrest, Samuel Neuenschwander, Emanuel Schmid-Siegert, Marco Pagni, Clément Train, David Dylus

Ecol Evol· March 2020

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OMA standalone: orthology inference among public and custom genomes and transcriptomes.
Adrian M Altenhoff, Jeremy Levy, Magdalena Zarowiecki, Bartłomiej Tomiczek, Alex Warwick Vesztrocy, David Dylus

Genome Res· July 2019

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RecPhyloXML: a format for reconciled gene trees.
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S Bansal, David Dylus

Bioinformatics· November 2018

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Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution.
David V Dylus, Anna Czarkwiani, Liisa M Blowes, Maurice R Elphick, Paola Oliveri

Genome Biol· February 2018

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The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.
Adrian M Altenhoff, Natasha M Glover, Clément-Marie Train, Klara Kaleb, Alex Warwick Vesztrocy, David Dylus

Nucleic Acids Res· January 2018

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Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web.
Oscar Robinson, David Dylus, Christophe Dessimoz

Mol Biol Evol· August 2016

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Skeletal regeneration in the brittle star Amphiura filiformis.
Anna Czarkwiani, Cinzia Ferrario, David Viktor Dylus, Michela Sugni, Paola Oliveri

Front Zool· April 2016

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Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks.
David Viktor Dylus, Anna Czarkwiani, Josefine Stångberg, Olga Ortega-Martinez, Sam Dupont

Evodevo· January 2016

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Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis.
Anna Czarkwiani, David V Dylus, Paola Oliveri

Gene Expr Patterns· December 2013

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