Publications by authors named "David E Draper"

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Divalent ion competition reveals reorganization of an RNA ion atmosphere upon folding.
Robert J Trachman, David E Draper

Nucleic Acids Res· May 2017

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Reflections on 20 years of RNA.
David E Draper

RNA· April 2015

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Folding of RNA tertiary structure: Linkages between backbone phosphates, ions, and water.
David E Draper

Biopolymers· December 2013

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Comparison of interactions of diamine and Mg²⁺ with RNA tertiary structures: similar versus differential effects on the stabilities of diverse RNA folds.
Robert J Trachman, David E Draper

Biochemistry· August 2013

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Denaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values.
Dominic Lambert, David E Draper

Biochemistry· November 2012

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Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structure.
Desirae Leipply, David E Draper

J Am Chem Soc· August 2011

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Effects of Mg2+ on the free energy landscape for folding a purine riboswitch RNA.
Desirae Leipply, David E Draper

Biochemistry· April 2011

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Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria.
Desirae Leipply, Dominic Lambert, David E Draper

Methods Enzymol· January 2011

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The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration.
Dominic Lambert, Desirae Leipply, David E Draper

J Mol Biol· November 2010

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Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient.
Desirae Leipply, David E Draper

Biochemistry· March 2010

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The influence of monovalent cation size on the stability of RNA tertiary structures.
Dominic Lambert, Desirae Leipply, Ross Shiman, David E Draper

J Mol Biol· July 2009

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Molecular simulation studies of monovalent counterion-mediated interactions in a model RNA kissing loop.
Alan A Chen, David E Draper, Rohit V Pappu

J Mol Biol· July 2009

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Diagnostic usefulness of graded exercise testing in pediatric supraventricular tachycardia.
David E Draper, Niels G Giddins, Joy McCort, Gil J Gross

Can J Cardiol· July 2009

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Direct quantitation of Mg2+-RNA interactions by use of a fluorescent dye.
Dan Grilley, Ana Maria Soto, David E Draper

Methods Enzymol· May 2009

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RNA folding: thermodynamic and molecular descriptions of the roles of ions.
David E Draper

Biophys J· December 2008

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Specific interactions of the L10(L12)4 ribosomal protein complex with mRNA, rRNA, and L11.
James R Iben, David E Draper

Biochemistry· March 2008

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Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions.
Dan Grilley, Vinod Misra, Gokhan Caliskan, David E Draper

Biochemistry· September 2007

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Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions.
Dominic Lambert, David E Draper

J Mol Biol· July 2007

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The structure of free L11 and functional dynamics of L11 in free, L11-rRNA(58 nt) binary and L11-rRNA(58 nt)-thiostrepton ternary complexes.
Donghan Lee, Joseph D Walsh, Ping Yu, Michelle A Markus, Theodora Choli-Papadopoulou, David E Draper

J Mol Biol· April 2007

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Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions.
Ana Maria Soto, Vinod Misra, David E Draper

Biochemistry· March 2007

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Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures.
Dan Grilley, Ana Maria Soto, David E Draper

Proc Natl Acad Sci U S A· September 2006

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Optimization of a ribosomal structural domain by natural selection.
Corina Maeder, Graeme L Conn, David E Draper

Biochemistry· May 2006

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A small protein unique to bacteria organizes rRNA tertiary structure over an extensive region of the 50 S ribosomal subunit.
Corina Maeder, David E Draper

J Mol Biol· November 2005

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Interactions of the N-terminal domain of ribosomal protein L11 with thiostrepton and rRNA.
Sarae L Bausch, Ekaterina Poliakova, David E Draper

J Biol Chem· August 2005

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Ions and RNA folding.
David E Draper, Dan Grilley, Ana Maria Soto

Annu Rev Biophys Biomol Struct· July 2005

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