Publications by authors named "David Granas"

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Autoregulation of RPL7B by inhibition of a structural splicing enhancer.
David Granas, Ishan Gammadde Hewa, Michael A White, Gary D Stormo

Nucleic Acids Res· July 2025

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Autoregulation of by inhibition of a structural splicing enhancer.
David Granas, Ishan Gammadde Hewa, Michael A White, Gary D Stormo

bioRxiv· April 2025

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Active learning of enhancers and silencers in the developing neural retina.
Ryan Z Friedman, Avinash Ramu, Sara Lichtarge, Yawei Wu, Lloyd Tripp, David M Granas

Cell Syst· January 2025

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Mutational scanning of classifies clinical variants and reveals biochemical properties of the transcriptional effector domain.
James L Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer

Genome Res· October 2024

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Pathogenic variants in have distinct -regulatory effects on enhancers and silencers in photoreceptors.
James L Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas

Genome Res· March 2024

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Mutational scanning of classifies clinical variants and reveals biochemical properties of the transcriptional effector domain.
James L Shepherdson, David M Granas, Jie Li, Zara Shariff, Stephen P Plassmeyer

bioRxiv· March 2024

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Pathogenic variants in Crx have distinct cis-regulatory effects on enhancers and silencers in photoreceptors.
James L Shepherdson, Ryan Z Friedman, Yiqiao Zheng, Chi Sun, Inez Y Oh, David M Granas

bioRxiv· December 2023

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Active learning of enhancer and silencer regulatory grammar in photoreceptors.
Ryan Z Friedman, Avinash Ramu, Sara Lichtarge, Connie A Myers, David M Granas

bioRxiv· August 2023

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A single-cell massively parallel reporter assay detects cell-type-specific gene regulation.
Siqi Zhao, Clarice K Y Hong, Connie A Myers, David M Granas, Michael A White

Nat Genet· February 2023

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Information content differentiates enhancers from silencers in mouse photoreceptors.
Ryan Z Friedman, David M Granas, Connie A Myers, Joseph C Corbo, Barak A Cohen

Elife· September 2021

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Autoregulation of yeast ribosomal proteins discovered by efficient search for feedback regulation.
Basab Roy, David Granas, Fredrick Bragg, Jonathan A Y Cher, Michael A White

Commun Biol· December 2020

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Synthetic and genomic regulatory elements reveal aspects of -regulatory grammar in mouse embryonic stem cells.
Dana M King, Clarice Kit Yee Hong, James L Shepherdson, David M Granas, Brett B Maricque

Elife· February 2020

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Measuring quantitative effects of methylation on transcription factor-DNA binding affinity.
Zheng Zuo, Basab Roy, Yiming Kenny Chang, David Granas, Gary D Stormo

Sci Adv· November 2017

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Whole genome sequencing identifies a deletion in protein phosphatase 2A that affects its stability and localization in Chlamydomonas reinhardtii.
Huawen Lin, Michelle L Miller, David M Granas, Susan K Dutcher

PLoS Genet· March 2014

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Identification of cilia genes that affect cell-cycle progression using whole-genome transcriptome analysis in Chlamydomonas reinhardtti.
Alison J Albee, Alan L Kwan, Huawen Lin, David Granas, Gary D Stormo

G3 (Bethesda)· June 2013

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Inferring binding energies from selected binding sites.
Yue Zhao, David Granas, Gary D Stormo

PLoS Comput Biol· December 2009

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