Publications by authors named "David Gresham"

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Obese individuals exhibit distinct temporal gene expression dynamics in response to influenza vaccination.
Megan Hockman, Julia Matthews, Michael A Carlock, Ted M Ross, David Gresham

Microbiol Spectr· August 2025

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Copy number variation facilitates rapid toggling between ecological strategies.
Farah Abdul-Rahman, David Gresham

bioRxiv· July 2025

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Segmental copy number amplifications are stable in the absence of selection.
Titir De, Nadav Ben Nun, Pieter Spealman, Ina Suresh, Grace Avecilla, David Gresham

bioRxiv· July 2025

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Intracellular replication dynamics of influenza A virus impose strong bottleneck effects.
Ernesto Alejandro Segredo-Otero, David Gresham

bioRxiv· July 2025

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Bacterial and DNA contamination of a small freshwater waterway used for drinking water after a large precipitation event.
Carolina Oliveira de Santana, Pieter Spealman, David Gresham, M Elias Dueker, Gabriel G Perron

Sci Total Environ· April 2025

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Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants.
Pieter Spealman, Carolina de Santana, Titir De, David Gresham

Mol Biol Evol· February 2025

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Template switching during DNA replication is a prevalent source of adaptive gene amplification.
Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, David Gresham

Elife· February 2025

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Template switching during DNA replication is a prevalent source of adaptive gene amplification.
Julie N Chuong, Nadav Ben Nun, Ina Suresh, Julia Cano Matthews, Titir De, David Gresham

bioRxiv· October 2024

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Patient subtyping analysis of baseline multi-omic data reveals distinct pre-immune states associated with antibody response to seasonal influenza vaccination.
Cigdem Sevim Bayrak, Christian V Forst, Drew R Jones, David J Gresham, Smruti Pushalkar

Clin Immunol· September 2024

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Prokaryote communities along a source-to-estuary river continuum in the Brazilian Atlantic Forest.
Carolina O de Santana, Pieter Spealman, Eddy Oliveira, David Gresham, Taise de Jesus

PeerJ· August 2024

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Phenotypic Variability of LGMD 2C/R5 in a Genetically Homogenous Group of Bulgarian Muslim Roma.
Ani Taneva, David Gresham, Velina Guergueltcheva, Teodora Chamova, Veneta Bojinova

Genes (Basel)· August 2024

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Multilevel gene expression changes in lineages containing adaptive copy number variants.
Pieter Spealman, Carolina de Santana, Titir De, David Gresham

bioRxiv· July 2024

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Chemical genomic analysis reveals the interplay between iron chelation, zinc homeostasis, and retromer function in the bioactivity of an ethanol adduct of the feijoa fruit-derived ellagitannin vescalagin.
Mona Mokhtari, Pegah Amiri, Darach Miller, David Gresham, Stephen J Bloor

G3 (Bethesda)· July 2024

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Polysome collapse and RNA condensation fluidize the cytoplasm.
Ying Xie, Tong Shu, Tiewei Liu, Marie-Christin Spindler, Julia Mahamid, David Gresham

Mol Cell· July 2024

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Host obesity impacts genetic variation in influenza A viral populations.
Marissa Knoll, Rebekah Honce, Victoria Meliopoulos, Ernesto Alejandro Segredo-Otero, Katherine E E Johnson, David Gresham

J Virol· June 2024

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Structure-primed embedding on the transcription factor manifold enables transparent model architectures for gene regulatory network and latent activity inference.
Andreas Tjärnberg, Maggie Beheler-Amass, Christopher A Jackson, Lionel A Christiaen, David Gresham

Genome Biol· January 2024

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Patient Subtyping Analysis of Baseline Multi-omic Data Reveals Distinct Pre-immune States Predictive of Vaccination Responses.
Cigdem Sevim Bayrak, Christian Forst, Drew R Jones, David Gresham, Smruti Pushalkar

bioRxiv· January 2024

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Simultaneous estimation of gene regulatory network structure and RNA kinetics from single cell gene expression.
Christopher A Jackson, Maggie Beheler-Amass, Andreas Tjärnberg, Ina Suresh, Angela Shang-Mei Hickey, David Gresham

bioRxiv· September 2023

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Parallel proteomics and phosphoproteomics defines starvation signal specific processes in cell quiescence.
Siyu Sun, Daniel Tranchina, David Gresham

bioRxiv· August 2023

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Copy number variation alters local and global mutational tolerance.
Grace Avecilla, Pieter Spealman, Julia Matthews, Elodie Caudal, Joseph Schacherer, David Gresham

Genome Res· August 2023

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mRNA condensation fluidizes the cytoplasm.
Ying Xie, Tiewei Liu, David Gresham, Liam J Holt

bioRxiv· July 2023

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Host obesity impacts genetic variation in influenza A viral populations.
Marissa Knoll, Rebekah Honce, Victoria Meliopoulos, Stacey Schultz-Cherry, Elodie Ghedin, David Gresham

bioRxiv· July 2023

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Best Practices in Microbial Experimental Evolution: Using Reporters and Long-Read Sequencing to Identify Copy Number Variation in Experimental Evolution.
Pieter Spealman, Titir De, Julie N Chuong, David Gresham

J Mol Evol· June 2023

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Influenza A virus reassortment is strain dependent.
Kishana Y Taylor, Ilechukwu Agu, Ivy José, Sari Mäntynen, A J Campbell, David Gresham

PLoS Pathog· March 2023

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Increased mesoscale diffusivity in response to acute glucose starvation.
Ying Xie, David Gresham, Liam J Holt

MicroPubl Biol· February 2023

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