Publications by authors named "David Heckerman"

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Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves.
Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, David Heckerman

JAMA Netw Open· February 2023

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Acute and Post-Acute COVID-19 Outcomes Among Immunologically Naïve Adults During Delta Versus Omicron Waves.
Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, David Heckerman

medRxiv· November 2022

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Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.
Glaucia Mendes Souza, Marie-Anne Van Sluys, Carolina Gimiliani Lembke, Hayan Lee, Gabriel Rodrigues Alves Margarido, David Heckerman

Gigascience· December 2019

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Ranking of non-coding pathogenic variants and putative essential regions of the human genome.
Alex Wells, David Heckerman, Ali Torkamani, Li Yin, Jonathan Sebat

Nat Commun· November 2019

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Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.
Deepti Gurdasani, Tommy Carstensen, Segun Fatumo, Guanjie Chen, Chris S Franklin, David Heckerman

Cell· October 2019

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Ensembles of Lasso Screening Rules.
Seunghak Lee, Nico Gornitz, Eric P Xing, David Heckerman, Christoph Lippert

IEEE Trans Pattern Anal Mach Intell· December 2018

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Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang, Xingtan Zhang, Haibao Tang, Qing Zhang, Xiuting Hua, David Heckerman

Nat Genet· December 2018

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Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Jisen Zhang, Xingtan Zhang, Haibao Tang, Qing Zhang, Xiuting Hua, David Heckerman

Nat Genet· November 2018

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Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.
Haibao Tang, Ewen F Kirkness, Christoph Lippert, William H Biggs, Martin Fabani, David Heckerman

Am J Hum Genet· November 2017

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Genetic variants associated with physical performance and anthropometry in old age: a genome-wide association study in the ilSIRENTE cohort.
David Heckerman, Bryan J Traynor, Anna Picca, Riccardo Calvani, Emanuele Marzetti

Sci Rep· November 2017

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Linear mixed model for heritability estimation that explicitly addresses environmental variation.
David Heckerman, Deepti Gurdasani, Carl Kadie, Cristina Pomilla, Tommy Carstensen

Proc Natl Acad Sci U S A· July 2016

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Impact of pre-adapted HIV transmission.
Jonathan M Carlson, Victor Y Du, Nico Pfeifer, Anju Bansal, Vincent Y F Tan, David Heckerman

Nat Med· June 2016

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Anti-hepatitis C virus T-cell immunity in the context of multiple exposures to the virus.
Katja Pfafferott, Pooja Deshpande, Elizabeth McKinnon, Shahzma Merani, Andrew Lucas, David Heckerman

PLoS One· April 2016

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Immune screening identifies novel T cell targets encoded by antisense reading frames of HIV-1.
Christoph T Berger, Anuska Llano, Jonathan M Carlson, Zabrina L Brumme, Mark A Brockman, David Heckerman

J Virol· April 2015

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Accurate liability estimation improves power in ascertained case-control studies.
Omer Weissbrod, Christoph Lippert, Dan Geiger, David Heckerman

Nat Methods· April 2015

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ConPADE: genome assembly ploidy estimation from next-generation sequencing data.
Gabriel R A Margarido, David Heckerman

PLoS Comput Biol· April 2015

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Greater power and computational efficiency for kernel-based association testing of sets of genetic variants.
Christoph Lippert, Jing Xiang, Danilo Horta, Christian Widmer, Carl Kadie, David Heckerman

Bioinformatics· November 2014

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Emergence of individual HIV-specific CD8 T cell responses during primary HIV-1 infection can determine long-term disease outcome.
Hendrik Streeck, Richard Lu, Noor Beckwith, Mark Milazzo, Michelle Liu, David Heckerman

J Virol· November 2014

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HIV control is mediated in part by CD8+ T-cell targeting of specific epitopes.
Florencia Pereyra, David Heckerman, Jonathan M Carlson, Carl Kadie, Damien Z Soghoian

J Virol· November 2014

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Further improvements to linear mixed models for genome-wide association studies.
Christian Widmer, Christoph Lippert, Omer Weissbrod, Nicolo Fusi, Carl Kadie, David Heckerman

Sci Rep· November 2014

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Literome: PubMed-scale genomic knowledge base in the cloud.
Hoifung Poon, Chris Quirk, Charlie DeZiel, David Heckerman

Bioinformatics· October 2014

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Differential T-cell responses of semi-immune and susceptible malaria subjects to in silico predicted and synthetic peptides of Plasmodium falciparum.
Jerome Nyhalah Dinga, Stanley Kimbung Mbandi, Fidelis Cho-Ngwa, Nde Peter Fon, Johnson Moliki, David Heckerman

Acta Trop· July 2014

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HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck.
Jonathan M Carlson, Malinda Schaefer, Daniela C Monaco, Rebecca Batorsky, Daniel T Claiborne, David Heckerman

Science· July 2014

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Quantifying the uncertainty in heritability.
Nicholas A Furlotte, David Heckerman, Christoph Lippert

J Hum Genet· May 2014

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Epigenome-wide association studies without the need for cell-type composition.
James Zou, Christoph Lippert, David Heckerman, Martin Aryee, Jennifer Listgarten

Nat Methods· March 2014

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