Publications by authors named "David Kyle"

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Global patterns of diversity and distribution in Aspergillus fungi are driven by human and environmental influences.
Olivia L Riedling, Kyle T David, Antonis Rokas

Curr Biol· September 2025

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Discovery of additional ancient genome duplications in yeasts.
Kyle T David, Linda Horianopoulos, Carla Gonçalves, Jacob L Steenwyk, Ana Pontes

bioRxiv· September 2025

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Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
Bo Feng, Yonglin Li, Biyang Xu, Hongyue Liu, Jacob L Steenwyk, Kyle T David

Mol Syst Biol· August 2025

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Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts.
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigail L Labella, Dana A Opulente

Proc Natl Acad Sci U S A· June 2025

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Clinical outcomes of lyophilised human amnion/chorion membrane in treatment of hard-to-heal diabetic foot ulcers in complex cases: a case series.
Megan Oltmann, David Kyle, Thomas J Gilbert, Carol Devlin, R Allyn Forsyth

J Wound Care· March 2025

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Global patterns of species diversity and distribution in the biomedically and biotechnologically important fungal genus .
Olivia L Riedling, Kyle T David, Antonis Rokas

bioRxiv· December 2024

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Chromosomal-Level Genome Assembly of the Antarctic Sea Urchin Sterechinus neumayeri: A Model for Antarctic Invertebrate Biology.
Jacob F Warner, Ryan C Range, Jennifer Fenner, Cheikouna Ka, Damien S Waits, Kyle T David

Genome Biol Evol· November 2024

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Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade.
Kyle T David, Joshua G Schraiber, Johnathan G Crandall, Abigal L Labella, Dana A Opulente

bioRxiv· July 2024

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Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage.
Bo Feng, Yonglin Li, Hongyue Liu, Jacob L Steenwyk, Kyle T David

bioRxiv· June 2024

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Delayed colonization of spp. and low prevalence of among infants of Asian ancestry born in Singapore: insights from the GUSTO cohort study.
Jia Xu, Rebbeca M Duar, Baoling Quah, Min Gong, Felicia Tin, David Kyle

Front Pediatr· June 2024

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Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon.
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves

Mol Biol Evol· April 2024

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Saccharomycotina yeasts defy long-standing macroecological patterns.
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail L LaBella, John F Wolters

Proc Natl Acad Sci U S A· March 2024

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Functional and evolutionary integration of a fungal gene with a bacterial operon.
Liang Sun, Kyle T David, John F Wolters, Steven D Karlen, Carla Gonçalves

bioRxiv· November 2023

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Saccharomycotina yeasts defy longstanding macroecological patterns.
Kyle T David, Marie-Claire Harrison, Dana A Opulente, Abigail L LaBella, John F Wolters

bioRxiv· August 2023

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Unsupervised Deep Learning Can Identify Protein Functional Groups from Unaligned Sequences.
Kyle T David, Kenneth M Halanych

Genome Biol Evol· May 2023

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Effects of probiotic and synbiotic supplementation on ponderal and linear growth in severely malnourished young infants in a randomized clinical trial.
Sharika Nuzhat, S M Tafsir Hasan, Parag Palit, Md Ridwan Islam, Mustafa Mahfuz, David J Kyle

Sci Rep· February 2023

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Global gradients in the distribution of animal polyploids.
Kyle T David

Proc Natl Acad Sci U S A· November 2022

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Association of human milk oligosaccharides and nutritional status of young infants among Bangladeshi mother-infant dyads.
Sharika Nuzhat, Parag Palit, Mustafa Mahfuz, Md Ridwan Islam, S M Tafsir Hasan, David J Kyle

Sci Rep· June 2022

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treatment promotes weight gain in Bangladeshi infants with severe acute malnutrition.
Michael J Barratt, Sharika Nuzhat, Kazi Ahsan, Steven A Frese, Aleksandr A Arzamasov, David Kyle

Sci Transl Med· April 2022

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TIAMMAt: Leveraging Biodiversity to Revise Protein Domain Models, Evidence from Innate Immunity.
Michael G Tassia, Kyle T David, James P Townsend, Kenneth M Halanych

Mol Biol Evol· December 2021

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The wider implications of the COVID-19 pandemic: Assessing the impact of accident and emergency use for frequent attenders.
David Kyle, Martin Shaw, Donogh Maguire, Donald McMillan, Tara Quasim

Int Emerg Nurs· May 2021

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Antibiotic exposure among young infants suffering from diarrhoea in Bangladesh.
Md Ridwan Islam, Sharika Nuzhat, Shah Mohammad Fahim, Parag Palit, Robin L Flannery, David J Kyle

J Paediatr Child Health· March 2021

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Feature frequency profile-based phylogenies are inaccurate.
Yuanning Li, Kyle T David, Xing-Xing Shen, Jacob L Steenwyk, Kenneth M Halanych

Proc Natl Acad Sci U S A· December 2020

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Colonization Resistance in the Infant Gut: The Role of in Reducing pH and Preventing Pathogen Growth.
Rebbeca M Duar, David Kyle, Giorgio Casaburi

High Throughput· March 2020

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Patterns of gene evolution following duplications and speciations in vertebrates.
Kyle T David, Jamie R Oaks, Kenneth M Halanych

PeerJ· March 2020

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