Publications by authors named "David Mastronarde"

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Accurate, automatic determination of astigmatism and phase with Ctfplotter in IMOD.
David N Mastronarde

J Struct Biol· March 2024

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Software tools for automated transmission electron microscopy.
Martin Schorb, Isabella Haberbosch, Wim J H Hagen, Yannick Schwab, David N Mastronarde

Nat Methods· June 2019

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Building bridges between cellular and molecular structural biology.
Ardan Patwardhan, Robert Brandt, Sarah J Butcher, Lucy Collinson, David Gault, David Mastronarde

Elife· July 2017

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Automated tilt series alignment and tomographic reconstruction in IMOD.
David N Mastronarde, Susannah R Held

J Struct Biol· February 2017

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Practical Experience with Hole-Free Phase Plates for Cryo Electron Microscopy.
Michael Marko, Chyongere Hsieh, Eric Leith, David Mastronarde, Sohei Motoki

Microsc Microanal· December 2016

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MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography.
Anchi Cheng, Richard Henderson, David Mastronarde, Steven J Ludtke, Remco H M Schoenmakers

J Struct Biol· November 2015

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The challenge of determining handedness in electron tomography and the use of DNA origami gold nanoparticle helices as molecular standards.
Ariane Briegel, Martin Pilhofer, David N Mastronarde, Grant J Jensen

J Struct Biol· July 2013

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Data management challenges in three-dimensional EM.
Ardan Patwardhan, José-Maria Carazo, Bridget Carragher, Richard Henderson, J Bernard Heymann, David Mastronarde

Nat Struct Mol Biol· December 2012

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Clustering and variance maps for cryo-electron tomography using wedge-masked differences.
John M Heumann, Andreas Hoenger, David N Mastronarde

J Struct Biol· September 2011

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Electron tomography of RabA4b- and PI-4Kβ1-labeled trans Golgi network compartments in Arabidopsis.
Byung-Ho Kang, Erik Nielsen, Mary Lai Preuss, David Mastronarde, L Andrew Staehelin

Traffic· March 2011

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Exploring the retinal connectome.
James R Anderson, Bryan W Jones, Carl B Watt, Margaret V Shaw, Jia-Hui Yang, David Mastronarde

Mol Vis· February 2011

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ER sliding dynamics and ER-mitochondrial contacts occur on acetylated microtubules.
Jonathan R Friedman, Brant M Webster, David N Mastronarde, Kristen J Verhey, Gia K Voeltz

J Cell Biol· August 2010

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Cryo-electron tomography of microtubule-kinesin motor complexes.
Julia Cope, Susan Gilbert, Ivan Rayment, David Mastronarde, Andreas Hoenger

J Struct Biol· May 2010

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CTF determination and correction for low dose tomographic tilt series.
Quanren Xiong, Mary K Morphew, Cindi L Schwartz, Andreas H Hoenger, David N Mastronarde

J Struct Biol· December 2009

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A computational framework for ultrastructural mapping of neural circuitry.
James R Anderson, Bryan W Jones, Jia-Hui Yang, Marguerite V Shaw, Carl B Watt, David Mastronarde

PLoS Biol· March 2009

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Fibrils connect microtubule tips with kinetochores: a mechanism to couple tubulin dynamics to chromosome motion.
J Richard McIntosh, Ekaterina L Grishchuk, Mary K Morphew, Artem K Efremov, Kirill Zhudenkov, David N Mastronarde

Cell· October 2008

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Organization of interphase microtubules in fission yeast analyzed by electron tomography.
Johanna L Höög, Cindi Schwartz, Angela T Noon, Eileen T O'Toole, David N Mastronarde

Dev Cell· March 2007

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Automated electron microscope tomography using robust prediction of specimen movements.
David N Mastronarde

J Struct Biol· October 2005

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The three-dimensional arrangement of intermediate filaments in Romney wool cortical cells.
Jonathan P Caldwell, David N Mastronarde, Joy L Woods, Warren G Bryson

J Struct Biol· September 2005

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Three-dimensional ultrastructure of Saccharomyces cerevisiae meiotic spindles.
Mark Winey, Garry P Morgan, Paul D Straight, Thomas H Giddings, David N Mastronarde

Mol Biol Cell· March 2005

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New views of cells in 3D: an introduction to electron tomography.
Richard McIntosh, Daniela Nicastro, David Mastronarde

Trends Cell Biol· January 2005

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A fast reconstruction algorithm for electron microscope tomography.
Kristian Sandberg, David N Mastronarde, Gregory Beylkin

J Struct Biol· July 2004

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Electron tomography of yeast cells.
Eileen T O'Toole, Mark Winey, J Richard McIntosh, David N Mastronarde

Methods Enzymol· July 2002

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Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method.
Thomas D Schneider, David N Mastronarde

Discrete Appl Math· December 1996

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