Publications by authors named "David Poger"

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Molecular Insights into the Dynamics of Amyloid Fibril Growth: Elongation and Lateral Assembly of GNNQQNY Protofibrils.
Torsten John, Aldo Rampioni, David Poger, Alan E Mark

ACS Chem Neurosci· February 2024

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Let's have a chat about chatbot(s) in (biological) microscopy.
Filip Braet, David Poger

J Microsc· November 2023

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Big data in contemporary electron microscopy: challenges and opportunities in data transfer, compute and management.
David Poger, Lisa Yen, Filip Braet

Histochem Cell Biol· September 2023

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Understanding the Activated Form of a Class-I Fusion Protein: Modeling the Interaction of the Ebola Virus Glycoprotein 2 with a Lipid Bilayer.
Shelley Barfoot, David Poger, Alan E Mark

Biochemistry· October 2020

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Curved or linear? Predicting the 3-dimensional structure of α-helical antimicrobial peptides in an amphipathic environment.
Glen van den Bergen, Martin Stroet, Bertrand Caron, David Poger, Alan E Mark

FEBS Lett· March 2020

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Effect of HO on the Structure and Dynamics of Water at the Interface with Phospholipid Bilayers.
Evelyne Deplazes, Farzaneh Sarrami, David Poger

J Phys Chem B· February 2020

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Effect of Triclosan and Chloroxylenol on Bacterial Membranes.
David Poger, Alan E Mark

J Phys Chem B· June 2019

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Could Cardiolipin Protect Membranes against the Action of Certain Antimicrobial Peptides? Aurein 1.2, a Case Study.
David Poger, Sanja Pöyry, Alan E Mark

ACS Omega· December 2018

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The effect of HO on the membrane morphology and hydrogen bonding of a phospholipid bilayer.
Evelyne Deplazes, David Poger, Bruce Cornell, Charles G Cranfield

Biophys Rev· October 2018

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The effect of hydronium ions on the structure of phospholipid membranes.
Evelyne Deplazes, David Poger, Bruce Cornell, Charles G Cranfield

Phys Chem Chem Phys· December 2017

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Real Cost of Speed: The Effect of a Time-Saving Multiple-Time-Stepping Algorithm on the Accuracy of Molecular Dynamics Simulations.
Sabine Reißer, David Poger, Martin Stroet, Alan E Mark

J Chem Theory Comput· June 2017

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Do All X-ray Structures of Protein-Ligand Complexes Represent Functional States? EPOR, a Case Study.
Michael S P Corbett, Alan E Mark, David Poger

Biophys J· February 2017

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Revisiting the scissor-like mechanism of activation for the erythropoietin receptor.
Michael S P Corbett, David Poger, Alan E Mark

FEBS Lett· September 2016

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Validating lipid force fields against experimental data: Progress, challenges and perspectives.
David Poger, Bertrand Caron, Alan E Mark

Biochim Biophys Acta· July 2016

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Effect of Ring Size in ω-Alicyclic Fatty Acids on the Structural and Dynamical Properties Associated with Fluidity in Lipid Bilayers.
David Poger, Alan E Mark

Langmuir· October 2015

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A ring to rule them all: the effect of cyclopropane Fatty acids on the fluidity of lipid bilayers.
David Poger, Alan E Mark

J Phys Chem B· April 2015

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Effect of methyl-branched fatty acids on the structure of lipid bilayers.
David Poger, Bertrand Caron, Alan E Mark

J Phys Chem B· December 2014

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Some Like It Hot: The Effect of Sterols and Hopanoids on Lipid Ordering at High Temperature.
Bertrand Caron, Alan E Mark, David Poger

J Phys Chem Lett· November 2014

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Determining the structure of interfacial peptide films: comparing neutron reflectometry and molecular dynamics simulations.
Ying Xue, Lizhong He, Anton P J Middelberg, Alan E Mark, David Poger

Langmuir· August 2014

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Activation of the epidermal growth factor receptor: a series of twists and turns.
David Poger, Alan E Mark

Biochemistry· April 2014

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The relative effect of sterols and hopanoids on lipid bilayers: when comparable is not identical.
David Poger, Alan E Mark

J Phys Chem B· December 2013

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Lipid Bilayers: The Effect of Force Field on Ordering and Dynamics.
David Poger, Alan E Mark

J Chem Theory Comput· November 2012

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An Automated Force Field Topology Builder (ATB) and Repository: Version 1.0.
Alpeshkumar K Malde, Le Zuo, Matthew Breeze, Martin Stroet, David Poger

J Chem Theory Comput· December 2011

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Effect of high pressure on fully hydrated DPPC and POPC bilayers.
Rong Chen, David Poger, Alan E Mark

J Phys Chem B· February 2011

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Activating the Prolactin Receptor: Effect of the Ligand on the Conformation of the Extracellular Domain.
Flora S Groothuizen, David Poger, Alan E Mark

J Chem Theory Comput· October 2010

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