Publications by authors named "David Rinker"

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Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species.
Carla Gonçalves, Jacob L Steenwyk, David C Rinker, Dana A Opulente, Abigail L LaBella

Mol Biol Evol· October 2025

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Reconstructing the 3D genome organization of Neanderthals reveals that chromatin folding shaped phenotypic and sequence divergence.
Evonne McArthur, David C Rinker, Yang Cheng, Qixuan Wang, Juan Wang

bioRxiv· September 2025

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Machine learning identifies novel signatures of antifungal drug resistance in yeasts.
Marie-Claire Harrison, David C Rinker, Abigail L LaBella, Dana A Opulente, John F Wolters

bioRxiv· May 2025

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An integrative genomic and chemical similarity approach linking fungal secondary metabolites and biosynthetic gene clusters.
Karin Steffen, Manuel Rangel-Grimaldo, Thomas J C Sauters, David C Rinker, Huzefa A Raja

bioRxiv· May 2025

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VUStruct: a compute pipeline for high throughput and personalized structural biology.
Christopher W Moth, Jonathan H Sheehan, Abdullah Al Mamun, R Michael Sivley, Alican Gulsevin, David Rinker

bioRxiv· March 2025

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Running a genetic stop sign accelerates oxygen metabolism and energy production in horses.
Gianni M Castiglione, Xin Chen, Zhenhua Xu, Nadir H Dbouk, Anamika A Bose, David Rinker

Science· March 2025

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Stable hypermutators revealed by the genomic landscape of DNA repair genes among yeast species.
Carla Gonçalves, Jacob L Steenwyk, David C Rinker, Dana A Opulente, Abigail L LaBella

bioRxiv· March 2025

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Review and metabolomic profiling of unsolved case reveals newly reported autosomal dominant congenital disorder of glycosylation, type Iw formerly thought to only be an autosomal recessive condition.
Kimberly M Ezell, Yutaka Furuta, Devin Oglesbee, Eniko K Pivnick, David Rinker

Mol Genet Metab Rep· December 2024

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Aspergillus fumigatus conidial surface-associated proteome reveals factors for fungal evasion and host immunity modulation.
Camila Figueiredo Pinzan, Clara Valero, Patrícia Alves de Castro, Jefferson Luiz da Silva, Kayleigh Earle, David C Rinker

Nat Microbiol· October 2024

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Machine Learning Reveals the Diversity of Human 3D Chromatin Contact Patterns.
Erin N Gilbertson, Colin M Brand, Evonne McArthur, David C Rinker, Shuzhen Kuang

Mol Biol Evol· October 2024

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Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence.
David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Huzefa A Raja

Commun Biol· September 2024

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Evolutionary origin and population diversity of a cryptic hybrid pathogen.
Jacob L Steenwyk, Sonja Knowles, Rafael W Bastos, Charu Balamurugan, David Rinker

Nat Commun· September 2024

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Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence.
David C Rinker, Thomas J C Sauters, Karin Steffen, Adiyantara Gumilang, Huzefa A Raja

bioRxiv· March 2024

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Archaic Introgression Shaped Human Circadian Traits.
Keila Velazquez-Arcelay, Laura L Colbran, Evonne McArthur, Colin M Brand, David C Rinker

Genome Biol Evol· December 2023

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Machine learning reveals the diversity of human 3D chromatin contact patterns.
Erin N Gilbertson, Colin M Brand, Evonne McArthur, David C Rinker, Shuzhen Kuang

bioRxiv· December 2023

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The contribution of mosaicism to genetic diseases and de novo pathogenic variants.
Rory J Tinker, Lisa Bastarache, Kimberly Ezell, Shilpa Nadimpalli Kobren, Cecilia Esteves, David Rinker

Am J Med Genet A· October 2023

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Archaic Introgression Shaped Human Circadian Traits.
Keila Velazquez-Arcelay, Laura L Colbran, Evonne McArthur, Colin Brand, David Rinker

bioRxiv· September 2023

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Spatial Distribution of Missense Variants within Complement Proteins Associates with Age Related Macular Degeneration.
Michelle Grunin, Sarah de Jong, Ellen L Palmer, Bowen Jin, David Rinker

medRxiv· August 2023

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Integrating Computational Approaches to Predict the Effect of Genetic Variants on Protein Stability in Retinal Degenerative Disease.
Michelle Grunin, Ellen Palmer, Sarah de Jong, Bowen Jin, David Rinker

Adv Exp Med Biol· July 2023

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Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen.
Jacob L Steenwyk, Sonja Knowles, Rafael W Bastos, Charu Balamurugan, David Rinker

bioRxiv· July 2023

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A novel, likely pathogenic variant in UBTF-related neurodegeneration with brain atrophy is associated with a severe divergent neurodevelopmental phenotype.
Rory J Tinker, Tiffany Guess, David C Rinker, Jonathan H Sheehan, Daniel Lubarsky

Mol Genet Genomic Med· December 2022

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Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by KCNC2 variants.
Souhrid Mukherjee, Thomas A Cassini, Ningning Hu, Tao Yang, Bian Li, David C Rinker

HGG Adv· October 2022

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Genomic and Molecular Identification of Genes Contributing to the Caspofungin Paradoxical Effect in .
Shu Zhao, Adela Martin-Vicente, Ana Cristina Colabardini, Lilian Pereira Silva, David C Rinker

Microbiol Spectr· October 2022

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The immune deficiency and c-Jun N-terminal kinase pathways drive the functional integration of the immune and circulatory systems of mosquitoes.
Yan Yan, Leah T Sigle, David C Rinker, Tania Y Estévez-Lao, John A Capra

Open Biol· September 2022

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Comparative Genomics Reveals a Single Nucleotide Deletion in That Results in White-Spore Phenotype in Natural Variants of .
John G Gibbons, Paolo D'Avino, Shu Zhao, Grace W Cox, David C Rinker

Front Fungal Biol· June 2022

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