Publications by authors named "David Shechner"

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DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.
Yuzhen Liu, Christopher D McGann, Conor P Herlihy, Mary Krebs, Thomas A Perkins, David M Shechner

bioRxiv· August 2025

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A molecular cartographer's toolkit for mapping RNA's uncharted realms.
Faraz K Mardakheh, David M Shechner

Cell Rep· July 2025

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Repeat A coordinates an assembly of SR proteins to recruit SPEN and induce gene silencing.
Jackson B Trotman, Alessandro Porrello, Scott A Schactler, Lorenzo E DeLeon, Quinn E Eberhard, David M Shechner

bioRxiv· May 2025

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Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER.
Sahar Attar, Valentino E Browning, Mary Krebs, Yuzhen Liu, Eva K Nichols, David M Shechner

Nat Methods· January 2025

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High-throughput identification of calcium-regulated proteins across diverse proteomes.
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, Melissa J S MacEwen, David M Shechner

Cell Rep· November 2024

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Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mapping.
Ashley F Tsue, Evan E Kania, Diana Q Lei, Rose Fields, Christopher D McGann, David M Shechner

Nat Methods· November 2024

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Nascent transcript O-MAP reveals the molecular architecture of a single-locus subnuclear compartment built by RBM20 and the RNA.
Evan E Kania, Aidan Fenix, Daphnée M Marciniak, Qiaoyi Lin, Sara Bianchi, David M Shechner

bioRxiv· November 2024

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Architecture of an RNA polymerase ribozyme illuminates the RNA World.
David M Shechner

Trends Genet· April 2024

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High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes.
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, David M Shechner

bioRxiv· January 2024

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Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens.
Sahar Attar, Valentino E Browning, Yuzhen Liu, Eva K Nichols, Ashley F Tsue, David M Shechner

bioRxiv· February 2023

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Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci .
Ashley F Tsue, Evan E Kania, Diana Q Lei, Rose Fields, Christopher D McGann, David M Shechner

bioRxiv· January 2023

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Targeting Noncoding RNA Domains to Genomic Loci with CRISPR-Display: Guidelines for Designing, Building, and Testing sgRNA-ncRNA Expression Constructs.
David M Shechner

Methods Mol Biol· March 2021

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Correction to Directed Evolution of Split APEX2 Peroxidase.
Yisu Han, Tess Caroline Branon, Jeffrey D Martell, Daniela Boassa, David Shechner

ACS Chem Biol· December 2019

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Directed Evolution of Split APEX2 Peroxidase.
Yisu Han, Tess Caroline Branon, Jeffrey D Martell, Daniela Boassa, David Shechner

ACS Chem Biol· April 2019

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High-throughput identification of RNA nuclear enrichment sequences.
Chinmay J Shukla, Alexandra L McCorkindale, Chiara Gerhardinger, Keegan D Korthauer, Moran N Cabili, David M Shechner

EMBO J· March 2018

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Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING).
Philipp G Maass, A Rasim Barutcu, David M Shechner, Catherine L Weiner, Marta Melé

Nat Struct Mol Biol· February 2018

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Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting

Elife· December 2017

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Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs.
Marta Melé, Kaia Mattioli, William Mallard, David M Shechner, Chiara Gerhardinger

Genome Res· January 2017

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Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.
David M Shechner, Ezgi Hacisuleyman, Scott T Younger, John L Rinn

Nat Methods· July 2015

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The structural basis of RNA-catalyzed RNA polymerization.
David M Shechner, David P Bartel

Nat Struct Mol Biol· August 2011

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A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination.
Yelena Koldobskaya, Erica M Duguid, David M Shechner, Nikolai B Suslov, Jingdong Ye

Nat Struct Mol Biol· January 2011

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A class I ligase ribozyme with reduced Mg2+ dependence: Selection, sequence analysis, and identification of functional tertiary interactions.
Sarah C Bagby, Nicholas H Bergman, David M Shechner, Catherine Yen, David P Bartel

RNA· December 2009

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Crystal structure of the catalytic core of an RNA-polymerase ribozyme.
David M Shechner, Robert A Grant, Sarah C Bagby, Yelena Koldobskaya, Joseph A Piccirilli

Science· November 2009

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