Publications by authors named "David States"

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The Coronavirus and the Risks to the Elderly in Long-Term Care.
William Gardner, David States, Nicholas Bagley

J Aging Soc Policy· July 2020

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CLO: The cell line ontology.
Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F Meehan, Alexander D Diehl, David J States

J Biomed Semantics· April 2015

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Metab2MeSH: annotating compounds with medical subject headings.
Maureen A Sartor, Alex Ade, Zach Wright, David States, Gilbert S Omenn

Bioinformatics· May 2012

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GLay: community structure analysis of biological networks.
Gang Su, Allan Kuchinsky, John H Morris, David J States, Fan Meng

Bioinformatics· December 2010

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Literature-based discovery of diabetes- and ROS-related targets.
Junguk Hur, Kelli A Sullivan, Adam D Schuyler, Yu Hong, Manjusha Pande, David J States

BMC Med Genomics· October 2010

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Inferring time-varying network topologies from gene expression data.
Arvind Rao, Alfred O Hero, David J States, James Douglas Engel

EURASIP J Bioinform Syst Biol· June 2010

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Motif discovery in tissue-specific regulatory sequences using directed information.
Arvind Rao, Alfred O Hero, David J States, James Douglas Engel

EURASIP J Bioinform Syst Biol· June 2010

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Understanding distal transcriptional regulation from sequence, expression and interactome perspectives.
Arvind Rao, David J States, Alfred O Hero, James Douglas Engel

J Bioinform Comput Biol· April 2010

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Computational and functional analysis of growth hormone (GH)-regulated genes identifies the transcriptional repressor B-cell lymphoma 6 (Bc16) as a participant in GH-regulated transcription.
Yili Chen, Grace Lin, Jeffrey S Huo, Deborah Barney, Zhenni Wang, David J States

Endocrinology· August 2009

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MiSearch adaptive pubMed search tool.
David J States, Alex S Ade, Zachary C Wright, Aaron V Bookvich, Brian D Athey

Bioinformatics· April 2009

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SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.
Junguk Hur, Adam D Schuyler, David J States, Eva L Feldman

Bioinformatics· March 2009

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Integrating and annotating the interactome using the MiMI plugin for cytoscape.
Jing Gao, Alex S Ade, V Glenn Tarcea, Terry E Weymouth, Barbara R Mirel, David J States

Bioinformatics· January 2009

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Michigan molecular interactions r2: from interacting proteins to pathways.
V Glenn Tarcea, Terry Weymouth, Alex Ade, Aaron Bookvich, Jing Gao, David States

Nucleic Acids Res· January 2009

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Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer.
Rajasree Menon, Qing Zhang, Yan Zhang, Damian Fermin, Nabeel Bardeesy, David J States

Cancer Res· January 2009

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Systematic comparison of the human saliva and plasma proteomes.
Weihong Yan, Rolf Apweiler, Brian M Balgley, Pinmanee Boontheung, Jonathan L Bundy, David States

Proteomics Clin Appl· January 2009

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A bioinformatics analysis of the cell line nomenclature.
Sirarat Sarntivijai, Alexander S Ade, Brian D Athey, David J States

Bioinformatics· December 2008

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A mouse plasma peptide atlas as a resource for disease proteomics.
Qing Zhang, Rajasree Menon, Eric W Deutsch, Sharon J Pitteri, Vitor M Faca, David J States

Genome Biol· August 2008

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Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.
Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, David J States

J Proteome Res· June 2008

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Cytoscape ESP: simple search of complex biological networks.
Maital Ashkenazi, Gary D Bader, Allan Kuchinsky, Menachem Moshelion, David J States

Bioinformatics· June 2008

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Using directed information to build biologically relevant influence networks.
Arvind Rao, Alfred O Hero, David J States, James Douglas Engel

J Bioinform Comput Biol· June 2008

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Human Proteinpedia enables sharing of human protein data.
Suresh Mathivanan, Mukhtar Ahmed, Natalie G Ahn, Hainard Alexandre, Ramars Amanchy, David J States

Nat Biotechnol· February 2008

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Using directed information to build biologically relevant influence networks.
Arvind Rao, Alfred O Hero, David J States, James Douglas Engel

Comput Syst Bioinformatics Conf· December 2007

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The Cell Line Ontology and its use in tagging cell line names in biomedical text.
Sirarat Sarntivijai, Alexander S Ade, Brian D Athey, David J States

AMIA Annu Symp Proc· October 2007

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Simplifying access to a Clinical Data Repository using schema summarization.
Cong Yu, David A Hanauer, Brian D Athey, Hosagrahar V Jagadish, David J States

AMIA Annu Symp Proc· October 2007

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Evolutionary-conserved gene expression response profiles across mammalian tissues.
Ji Chen, Thomas W Blackwell, Damian Fermin, Rajasree Menon, Yili Chen, David J States

OMICS· May 2007

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