Publications by authors named "David Swigon"

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Stochastic Modeling of Viral Reproductive Cycle: Study of Viral and Cell Extinction.
Rahnuma Islam, David Swigon

Bull Math Biol· October 2025

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Evolution of pathogen tolerance and reproductive trade-off implications.
Sabrina H Streipert, David Swigon, Mark Q Wilber, Jason C Walsman

J Math Biol· April 2025

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Mechanical causes and implications of repetitive DNA motifs.
Paul Torrillo, David Swigon

Math Biosci· January 2025

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Rigorous Mapping of Data to Qualitative Properties of Parameter Values and Dynamics: A Case Study on a Two-Variable Lotka-Volterra System.
Xiaoyu Duan, Jonathan E Rubin, David Swigon

Bull Math Biol· June 2023

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Identification of Clinical Phenotypes in Septic Patients Presenting With Hypotension or Elevated Lactate.
Zachary T Aldewereld, Li Ang Zhang, Alisa Urbano, Robert S Parker, David Swigon

Front Med (Lausanne)· May 2022

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Unifying cardiovascular modelling with deep reinforcement learning for uncertainty aware control of sepsis treatment.
Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon

PLOS Digit Health· February 2022

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A data-driven model of the role of energy in sepsis.
Ivan Ramirez-Zuniga, Jonathan E Rubin, David Swigon, Heinz Redl, Gilles Clermont

J Theor Biol· January 2022

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Synchronization and locking in oscillators with flexible periods.
Mariya Savinov, David Swigon, Bard Ermentrout

Chaos· March 2021

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Slow-fast analysis of a multi-group asset flow model with implications for the dynamics of wealth.
Mark DeSantis, David Swigon

PLoS One· April 2019

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Mathematical modeling of energy consumption in the acute inflammatory response.
Ivan Ramirez-Zuniga, Jonathan E Rubin, David Swigon, Gilles Clermont

J Theor Biol· January 2019

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Characterization of Blood Volume Space and Mitochondrial Activity in Functional Renal Cells.
Matthew J McCarroll, Gilles Clermont, Hernando Gomez, David Swigon, Robert S Parker

IFAC Pap OnLine· September 2018

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APT-MCMC, a C++/Python implementation of Markov Chain Monte Carlo for parameter identification.
Li Ang Zhang, Alisa Urbano, Gilles Clermont, David Swigon, Ipsita Banerjee

Comput Chem Eng· February 2018

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Discrete Dynamical Modeling of Influenza Virus Infection Suggests Age-Dependent Differences in Immunity.
Ericka Keef, Li Ang Zhang, David Swigon, Alisa Urbano, G Bard Ermentrout

J Virol· December 2017

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A One-Nearest-Neighbor Approach to Identify the Original Time of Infection Using Censored Baboon Sepsis Data.
Li Ang Zhang, Robert S Parker, David Swigon, Ipsita Banerjee, Soheyl Bahrami

Crit Care Med· June 2016

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A Three-Tiered Study of Differences in Murine Intrahost Immune Response to Multiple Pneumococcal Strains.
Ericka Mochan-Keef, David Swigon, G Bard Ermentrout, Gilles Clermont

PLoS One· May 2016

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Lac repressor mediated DNA looping: Monte Carlo simulation of constrained DNA molecules complemented with current experimental results.
Yoav Y Biton, Sandip Kumar, David Dunlap, David Swigon

PLoS One· October 2015

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The inflammatory response to influenza A virus (H1N1): An experimental and mathematical study.
Ian Price, Ericka D Mochan-Keef, David Swigon, G Bard Ermentrout, Sarah Lukens

J Theor Biol· June 2015

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DNA topology confers sequence specificity to nonspecific architectural proteins.
Juan Wei, Luke Czapla, Michael A Grosner, David Swigon, Wilma K Olson

Proc Natl Acad Sci U S A· November 2014

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A large-scale immuno-epidemiological simulation of influenza A epidemics.
Sarah Lukens, Jay DePasse, Roni Rosenfeld, Elodie Ghedin, Ericka Mochan, David Swigon

BMC Public Health· September 2014

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A mathematical model of intrahost pneumococcal pneumonia infection dynamics in murine strains.
Ericka Mochan, David Swigon, G Bard Ermentrout, Sarah Lukens, Gilles Clermont

J Theor Biol· July 2014

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Using a continuum model to predict closure time of gaps in intestinal epithelial cell layers.
Julia C Arciero, Qi Mi, Maria Branca, David Hackam, David Swigon

Wound Repair Regen· October 2013

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Interplay of protein and DNA structure revealed in simulations of the lac operon.
Luke Czapla, Michael A Grosner, David Swigon, Wilma K Olson

PLoS One· August 2013

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Dynamical simulations of DNA supercoiling and compression.
David Swigon, Sookkyung Lim, Yongsam Kim

Biochem Soc Trans· April 2013

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Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations.
Wilma K Olson, Michael A Grosner, Luke Czapla, David Swigon

Biochem Soc Trans· April 2013

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Continuum model of collective cell migration in wound healing and colony expansion.
Julia C Arciero, Qi Mi, Maria F Branca, David J Hackam, David Swigon

Biophys J· February 2011

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