Publications by authors named "David Umulis"

Claim this Profile
R
Rules of life at the interface of calcium signaling and mechanobiology.
Linlin Li, David Gazzo, Shams Mowafak Saad, Nissa J Larson, Eugene S Kim, David M Umulis

APL Bioeng· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
L
Local traveling waves of cytosolic Ca elicited by defense signals or wounding are propagated by distinct mechanisms in .
Weiwei Zhang, Nilay Kumar, Jessica R Helwig, Alexis Hoerter, Anjali S Iyer-Pascuzzi, David M Umulis

Sci Signal· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
R
Reactive oxygen species counteract zebrafish wound contraction and promote wound healing.
Chang Ding, Linlin Li, Yueyang Wang, Hong-Anh A Nguyen, Deva D Chan, David M Umulis

Biophys J· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Digital cousins: Simultaneous optimization of one model for BMP signaling in distant relatives reveals essential core.
Linlin Li, Thembi Mdluli, Gregery Buzzard, David Umulis

Comput Struct Biotechnol J· September 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Modeling Epithelial Morphogenesis and Cell Rearrangement during Zebrafish Epiboly: Tissue Deformation, Cell-Cell Coupling, and the Mechanical Response to Stress.
Sharon B Minsuk, T J Sego, David M Umulis, Mary C Mullins, James A Glazier

bioRxiv· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A Physics-Informed Deep Learning Deformable Medical Image Registration Method Based on Neural ODEs.
Amirhossein Amiri-Hezaveh, Shelly Tan, Qing Deng, David Umulis, Lauren Cunniff

Int J Comput Vis· June 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
O
Optimal performance objectives in the highly conserved bone morphogenetic protein signaling pathway.
Razeen Shaikh, Nissa J Larson, Jayden Kam, Donny Hanjaya-Putra, Jeremiah Zartman, David M Umulis

NPJ Syst Biol Appl· September 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
O
Optimal Performance Objectives in the Highly Conserved Bone Morphogenetic Protein Signaling Pathway.
Razeen Shaikh, Nissa J Larson, Donny Hanjaya-Putra, Jeremiah Zartman, David M Umulis

bioRxiv· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Atypical peripheral actin band formation via overactivation of RhoA and nonmuscle myosin II in mitofusin 2-deficient cells.
Yueyang Wang, Lee D Troughton, Fan Xu, Aritra Chatterjee, Chang Ding, David Umulis

Elife· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Early radial positional information in the cochlea is optimized by a precise linear BMP gradient and enhanced by SOX2.
Matthew J Thompson, Caryl A Young, Vidhya Munnamalai, David M Umulis

Sci Rep· May 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Computational modeling of TGF-β2:TβRI:TβRII receptor complex assembly as mediated by the TGF-β coreceptor betaglycan.
Aasakiran Madamanchi, Michelle Ingle, Andrew P Hinck, David M Umulis

Biophys J· April 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
PDE-constrained shape registration to characterize biological growth and morphogenesis from imaging data.
Aishwarya Pawar, Linlin Li, Arun K Gosain, David M Umulis, Adrian Buganza Tepole

Eng Comput· October 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
"
"I Think I Am Getting There" Understanding the Computational Identity of Engineering Students Participating in a Computationally Intensive Thermodynamics Course.
Huma Shoaib, Aasakiran Madamanchi, Elsje Pienaar, David M Umulis, Monica E Cardella

Biomed Eng Educ· September 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
H
Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling.
Md Shahriar Karim, Aasakiran Madamanchi, James A Dutko, Mary C Mullins, David M Umulis

PLoS Comput Biol· September 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Automatic wavelet-based 3D nuclei segmentation and analysis for multicellular embryo quantification.
Tzu-Ching Wu, Xu Wang, Linlin Li, Ye Bu, David M Umulis

Sci Rep· May 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Diversity and robustness of bone morphogenetic protein pattern formation.
Aasakiran Madamanchi, Mary C Mullins, David M Umulis

Development· April 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Acceleration of PDE-Based Biological Simulation Through the Development of Neural Network Metamodels.
Lukasz Burzawa, Linlin Li, Xu Wang, Adrian Buganza-Tepole, David M Umulis

Curr Pathobiol Rep· December 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mitofusin 2 regulates neutrophil adhesive migration and the actin cytoskeleton.
Wenqing Zhou, Alan Y Hsu, Yueyang Wang, Ramizah Syahirah, Tianqi Wang, David Umulis

J Cell Sci· September 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Proteolytic Restriction of Chordin Range Underlies BMP Gradient Formation.
Francesca B Tuazon, Xu Wang, Jonathan Lee Andrade, David Umulis, Mary C Mullins

Cell Rep· August 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
E
Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo.
Linlin Li, Xu Wang, Mary C Mullins, David M Umulis

J Math Biol· January 2020

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Phenotypical microRNA screen reveals a noncanonical role of CDK2 in regulating neutrophil migration.
Alan Y Hsu, Decheng Wang, Sheng Liu, Justice Lu, Ramizah Syahirah, David M Umulis

Proc Natl Acad Sci U S A· September 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Interplay Between the Persistent Random Walk and the Contact Inhibition of Locomotion Leads to Collective Cell Behaviors.
Abdel-Rahman Hassan, Thomas Biel, David M Umulis, Taeyoon Kim

Bull Math Biol· August 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Mechanisms and Measurements of Scale Invariance of Morphogen Gradients.
Yan Huang, David Umulis

Methods Mol Biol· July 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Imaging and Quantification of P-Smad1/5 in Zebrafish Blastula and Gastrula Embryos.
Joseph Zinski, Francesca Tuazon, Yan Huang, Mary Mullins, David Umulis

Methods Mol Biol· June 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Scale invariance of BMP signaling gradients in zebrafish.
Yan Huang, David M Umulis

Sci Rep· April 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis