Publications by authors named "David Van Valen"

Claim this Profile
C
CellSAM: a foundation model for cell segmentation.
Markus Marks, Uriah Israel, Rohit Dilip, Qilin Li, Changhua Yu, David Van Valen

Nat Methods· December 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
M
Modulation of bacterial cell size and growth rate via activation of a cell envelope stress response.
Amanda Miguel, Matylda Zietek, Handuo Shi, Anna Sueki, Federico Corona, David Van Valen

mBio· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
U
Uncovering the molecular basis of kinase activity and substrate recognition with phospho-PCA.
Changhua Yu, Edward Pao, David Van Valen

bioRxiv· November 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Automated classification of cellular expression in multiplexed imaging data with Nimbus.
Josef Lorenz Rumberger, Noah F Greenwald, Jolene S Ranek, Potchara Boonrat, Cameron Walker, David Van Valen

Nat Methods· October 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
G
Generalized cell phenotyping for spatial proteomics with language-informed vision models.
Xuefei Julie Wang, Rohit Dilip, Ahamed Raffey Iqbal, Yuval Bussi, Caitlin Brown, David Van Valen

bioRxiv· August 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
CellSAM: A Foundation Model for Cell Segmentation.
Uriah Israel, Markus Marks, Rohit Dilip, Qilin Li, Changhua Yu, David Van Valen

bioRxiv· February 2025

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
C
Cellular behavior analysis from live-cell imaging of TCR T cell-cancer cell interactions.
Archit Verma, Changhua Yu, Stefanie Bachl, Ivan Lopez, Morgan Schwartz, David Van Valen

bioRxiv· November 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
Ten challenges and opportunities in computational immuno-oncology.
Riyue Bao, Alan Hutson, Anant Madabhushi, Vanessa D Jonsson, Spencer R Rosario, David Van Valen

J Immunother Cancer· October 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The multimodality cell segmentation challenge: toward universal solutions.
Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, David Van Valen

Nat Methods· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Automated classification of cellular expression in multiplexed imaging data with Nimbus.
J Lorenz Rumberger, Noah F Greenwald, Jolene S Ranek, Potchara Boonrat, Cameron Walker, David Van Valen

bioRxiv· June 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning.
Emily Laubscher, Xuefei Wang, Nitzan Razin, Tom Dougherty, Rosalind J Xu, David Van Valen

Cell Syst· May 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Accurate single-molecule spot detection for image-based spatial transcriptomics with weakly supervised deep learning.
Emily Laubscher, Xuefei Julie Wang, Nitzan Razin, Tom Dougherty, Rosalind J Xu, David Van Valen

bioRxiv· February 2024

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A microwell platform for high-throughput longitudinal phenotyping and selective retrieval of organoids.
Alexandra Sockell, Wing Wong, Scott Longwell, Thy Vu, Kasper Karlsson, David Van Valen

Cell Syst· September 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Scaling biological discovery at the interface of deep learning and cellular imaging.
Morgan Schwartz, Uriah Israel, Xuefei Julie Wang, Emily Laubscher, Changhua Yu, David Van Valen

Nat Methods· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A spatially resolved timeline of the human maternal-fetal interface.
Shirley Greenbaum, Inna Averbukh, Erin Soon, Gabrielle Rizzuto, Alex Baranski, David Van Valen

Nature· July 2023

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
I
Imaging cell biology.
Brenda Andrews, Jae-Byum Chang, Lucy Collinson, Dong Li, Emma Lundberg, David Van Valen

Nat Cell Biol· August 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
Author Correction: The immunoregulatory landscape of human tuberculosis granulomas.
Erin F McCaffrey, Michele Donato, Leeat Keren, Zhenghao Chen, Alea Delmastro, David Van Valen

Nat Immunol· May 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
W
Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning.
Noah F Greenwald, Geneva Miller, Erick Moen, Alex Kong, Adam Kagel, David Van Valen

Nat Biotechnol· April 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
T
The immunoregulatory landscape of human tuberculosis granulomas.
Erin F McCaffrey, Michele Donato, Leeat Keren, Zhenghao Chen, Alea Delmastro, David Van Valen

Nat Immunol· February 2022

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
S
Single-cell metabolic profiling of human cytotoxic T cells.
Felix J Hartmann, Dunja Mrdjen, Erin McCaffrey, David R Glass, Noah F Greenwald, David Van Valen

Nat Biotechnol· February 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
P
Publisher Correction: DeepCell Kiosk: scaling deep learning-enabled cellular image analysis with Kubernetes.
Dylan Bannon, Erick Moen, Morgan Schwartz, Enrico Borba, Takamasa Kudo, David Van Valen

Nat Methods· February 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
DeepCell Kiosk: scaling deep learning-enabled cellular image analysis with Kubernetes.
Dylan Bannon, Erick Moen, Morgan Schwartz, Enrico Borba, Takamasa Kudo, David Van Valen

Nat Methods· January 2021

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
D
Deep learning for cellular image analysis.
Erick Moen, Dylan Bannon, Takamasa Kudo, William Graf, Markus Covert, David Van Valen

Nat Methods· December 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
V
Voices in methods development.
Polina Anikeeva, Edward Boyden, Clifford Brangwynne, Ibrahim I Cissé, Oliver Fiehn, David van Valen

Nat Methods· October 2019

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis
A
A Structured Tumor-Immune Microenvironment in Triple Negative Breast Cancer Revealed by Multiplexed Ion Beam Imaging.
Leeat Keren, Marc Bosse, Diana Marquez, Roshan Angoshtari, Samir Jain, David Van Valen

Cell· September 2018

Social Media Activity not collected for this article yet.

Sign Up to Request Social Media Analysis