Publications by authors named "Dedi Wang"

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Modeling Boltzmann-weighted structural ensembles of proteins using artificial intelligence-based methods.
Akashnathan Aranganathan, Xinyu Gu, Dedi Wang, Bodhi P Vani, Pratyush Tiwary

Curr Opin Struct Biol· April 2025

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Augmenting Human Expertise in Weighted Ensemble Simulations through Deep Learning-Based Information Bottleneck.
Dedi Wang, Pratyush Tiwary

J Chem Theory Comput· December 2024

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Augmenting Human Expertise in Weighted Ensemble Simulations through Deep Learning based Information Bottleneck.
Dedi Wang, Pratyush Tiwary

ArXiv· November 2024

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Calculating Protein-Ligand Residence Times through State Predictive Information Bottleneck Based Enhanced Sampling.
Suemin Lee, Dedi Wang, Markus A Seeliger, Pratyush Tiwary

J Chem Theory Comput· July 2024

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Information Bottleneck Approach for Markov Model Construction.
Dedi Wang, Yunrui Qiu, Eric R Beyerle, Xuhui Huang, Pratyush Tiwary

J Chem Theory Comput· June 2024

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An Information Bottleneck Approach for Markov Model Construction.
Dedi Wang, Yunrui Qiu, Eric R Beyerle, Xuhui Huang, Pratyush Tiwary

ArXiv· June 2024

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From Latent Dynamics to Meaningful Representations.
Dedi Wang, Yihang Wang, Luke Evans, Pratyush Tiwary

J Chem Theory Comput· May 2024

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Calculating Protein-Ligand Residence Times Through State Predictive Information Bottleneck based Enhanced Sampling.
Suemin Lee, Dedi Wang, Markus A Seeliger, Pratyush Tiwary

bioRxiv· April 2024

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AlphaFold2-RAVE: From Sequence to Boltzmann Ranking.
Bodhi P Vani, Akashnathan Aranganathan, Dedi Wang, Pratyush Tiwary

J Chem Theory Comput· July 2023

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Accelerating All-Atom Simulations and Gaining Mechanistic Understanding of Biophysical Systems through State Predictive Information Bottleneck.
Shams Mehdi, Dedi Wang, Shashank Pant, Pratyush Tiwary

J Chem Theory Comput· May 2022

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Influence of Long-Range Forces on the Transition States and Dynamics of NaCl Ion-Pair Dissociation in Water.
Dedi Wang, Renjie Zhao, John D Weeks, Pratyush Tiwary

J Phys Chem B· January 2022

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State predictive information bottleneck.
Dedi Wang, Pratyush Tiwary

J Chem Phys· April 2021

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Critical slowing down and attractive manifold: A mechanism for dynamic robustness in the yeast cell-cycle process.
Yao Zhao, Dedi Wang, Zhiwen Zhang, Ying Lu, Xiaojing Yang

Phys Rev E· April 2020

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A polymorphism in the transcriptional regulatory region strongly influences ovine FSHR mRNA decay.
Dedi Wang, Xing Du, Yinxia Li, Qifa Li

Reprod Domest Anim· January 2019

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