Publications by authors named "Deeptarup Biswas"

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BrainProt v3.0: An Integrative and Simplified Omics-Based Knowledge-Base About the Human Brain and Its Associated Diseases.
Deeptarup Biswas, Sanjyot Vinayak Shenoy, Aparna Chauhan, Ankit Halder, Advait Padhye

J Proteome Res· November 2025

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AlphaCross-XL: A Seamless Tool for Automated and Proteome-Scale Mapping of Cross-Linked Peptides Onto 3D Protein Structures.
Sanjyot Vinayak Shenoy, Deeptarup Biswas, Arthur Zalevsky, Audrey Kishishita, Ayushi Verma

Mol Cell Proteomics· October 2025

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Molecular Profiling of Belumosudil-Treated IOMM-Lee Meningioma Cells Reveals Repurposing Potential via Enhanced Oxidative Phosphorylation and ROS-Mediated Cell Death.
Ankit Halder, Archisman Maitra, Diksha Attrish, Adrita Saha, Deeptarup Biswas

J Proteome Res· October 2025

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Dementia with lewy bodies patients with high tau levels display unique proteome profiles.
Sinead Greally, Mukesh Kumar, Christoph Schlaffner, Hanne van der Heijden, Elisabeth S Lawton, Deeptarup Biswas

Mol Neurodegener· December 2024

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A proteome-level view of brain tumors for a better understanding of novel diagnosis, prognosis, and therapy.
Medha Gayathri J Pai, Deeptarup Biswas, Ayushi Verma, Sanjeeva Srivastava

Expert Rev Proteomics· January 2024

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Integrated Meta-Omics Analysis Unveils the Pathways Modulating Tumorigenesis and Proliferation in High-Grade Meningioma.
Deeptarup Biswas, Ankit Halder, Abhilash Barpanda, Susmita Ghosh, Aparna Chauhan

Cells· October 2023

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A large-scale targeted proteomics of serum and tissue shows the utility of classifying high grade and low grade meningioma tumors.
Ankit Halder, Deeptarup Biswas, Aparna Chauhan, Adrita Saha, Shreeman Auromahima

Clin Proteomics· September 2023

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A Proteomics Investigation of Cigarette Smoke Exposed Wistar Rats Revealed Improved Anti-Inflammatory Effects of the Cysteamine Nanoemulsions Delivered Inhalation.
Gautam Sharma, Swati Pund, Rajkumar Govindan, Mehar Un Nissa, Deeptarup Biswas

OMICS· August 2023

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Deep proteome investigation of high-grade gliomas reveals heterogeneity driving differential metabolism of 5-aminolevulinic acid.
Saicharan Ghantasala, Amruth Bhat, Unnati Agarwal, Deeptarup Biswas, Prawesh Bhattarai

Neurooncol Adv· June 2023

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Deep Phosphoproteome Landscape of Interhemispheric Functionality of Neuroanatomical Regions of the Human Brain.
Deeptarup Biswas, Neha Kumari, Mercedes Lachén-Montes, Sampurna Dutta, Ishita Agrawal

J Proteome Res· April 2023

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Integrative Proteomic and Pharmacological Analysis of Colon Cancer Reveals the Classical Lipogenic Pathway with Prognostic and Therapeutic Opportunities.
Abhilash Barpanda, Deeptarup Biswas, Ayushi Verma, Shashwati Parihari, Avinash Singh

J Proteome Res· March 2023

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Clinical Proteomics for Meningioma: An Integrated Workflow for Quantitative Proteomics and Biomarker Validation in Formalin-Fixed Paraffin-Embedded Tissue Samples.
Arijit Mukherjee, Susmita Ghosh, Deeptarup Biswas, Aishwarya Rao, Prakash Shetty

OMICS· September 2022

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Deciphering the Interregional and Interhemisphere Proteome of the Human Brain in the Context of the Human Proteome Project.
Deeptarup Biswas, Sanjyot Vinayak Shenoy, Chetanya Chetanya, Mercedes Lachén-Montes, Abhilash Barpanda

J Proteome Res· December 2021

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Recent advances in mass-spectrometry based proteomics software, tools and databases.
Ankit Halder, Ayushi Verma, Deeptarup Biswas, Sanjeeva Srivastava

Drug Discov Today Technol· December 2021

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Comprehensive proteomic analysis reveals distinct functional modules associated with skull base and supratentorial meningiomas and perturbations in collagen pathway components.
Shuvolina Mukherjee, Deeptarup Biswas, Sridhar Epari, Prakash Shetty, Aliasgar Moiyadi

J Proteomics· August 2021

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Multiple Reaction Monitoring-Based Targeted Assays for the Validation of Protein Biomarkers in Brain Tumors.
Saicharan Ghantasala, Medha Gayathri J Pai, Deeptarup Biswas, Nikita Gahoi, Shuvolina Mukherjee

Front Oncol· May 2021

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The proteomic analysis shows enrichment of RNA surveillance pathways in adult SHH and extensive metabolic reprogramming in Group 3 medulloblastomas.
Manubhai Kp, Anurag Kumar, Deeptarup Biswas, Aliasgar Moiyadi, Prakash Shetty

Brain Tumor Pathol· April 2021

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Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential.
Kruthi Suvarna, Deeptarup Biswas, Medha Gayathri J Pai, Arup Acharjee, Renuka Bankar

Front Physiol· April 2021

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Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19.
Renuka Bankar, Kruthi Suvarna, Saicharan Ghantasala, Arghya Banerjee, Deeptarup Biswas

iScience· March 2021

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Multiplexed quantitative proteomics provides mechanistic cues for malaria severity and complexity.
Vipin Kumar, Sandipan Ray, Shalini Aggarwal, Deeptarup Biswas, Manali Jadhav

Commun Biol· November 2020

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Palliative Role of Aqueous Ginger Extract on -Nitroso--Methylurea-Induced Gastric Cancer.
Debjani P Mansingh, Shalini Pradhan, Deeptarup Biswas, R Barathidasan, Hannah R Vasanthi

Nutr Cancer· September 2020

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Comprehending Meningioma Signaling Cascades Using Multipronged Proteomics Approaches & Targeted Validation of Potential Markers.
Shuvolina Mukherjee, Deeptarup Biswas, Rucha Gadre, Pooja Jain, Nelofer Syed

Front Oncol· August 2020

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