Publications by authors named "Desh Ranjan"

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A complete diploid human genome benchmark for personalized genomics.
Nancy F Hansen, Nathan Dwarshuis, Hyun Joo Ji, Arang Rhie, Hailey Loucks, Desh Ranjan

bioRxiv· September 2025

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NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.
Eleni Adam, Desh Ranjan, Harold Riethman

BMC Bioinformatics· December 2022

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Analysis of Subtelomeric REXTAL Assemblies Using QUAST.
Tunazzina Islam, Desh Ranjan, Mohammad Zubair, Eleanor Young, Ming Xiao

IEEE/ACM Trans Comput Biol Bioinform· December 2021

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Nanopore Guided Assembly of Segmental Duplications near Telomeres.
Eleni Adam, Tunazzina Islam, Desh Ranjan, Harold Riethman

Proc IEEE Int Symp Bioinformatics Bioeng· October 2019

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REXTAL: Regional Extension of Assemblies Using Linked-Reads.
Tunazzina Islam, Desh Ranjan, Eleanor Young, Ming Xiao, Mohammad Zubair

Bioinform Res Appl (2018)· June 2018

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An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images.
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al Nasr

IEEE/ACM Trans Comput Biol Bioinform· November 2017

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CHALLENGES IN MATCHING SECONDARY STRUCTURES IN CRYO-EM: AN EXPLORATION.
Devin Haslam, Mohammad Zubair, Desh Ranjan, Abhishek Biswas, Jing He

Proceedings (IEEE Int Conf Bioinformatics Biomed)· December 2016

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Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm.
Kamal Al Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He

IEEE/ACM Trans Comput Biol Bioinform· March 2016

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ISQuest: finding insertion sequences in prokaryotic sequence fragment data.
Abhishek Biswas, David T Gauthier, Desh Ranjan, Mohammad Zubair

Bioinformatics· November 2015

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A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data.
Abhishek Biswas, Desh Ranjan, Mohammad Zubair, Jing He

J Comput Biol· September 2015

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Improved efficiency in cryo-EM secondary structure topology determination from inaccurate data.
Abhishek Biswas, Dong Si, Kamal Al Nasr, Desh Ranjan, Mohammad Zubair

J Bioinform Comput Biol· June 2012

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Ranking valid topologies of the secondary structure elements using a constraint graph.
Kamal Al Nasr, Desh Ranjan, Mohammad Zubair, Jing He

J Bioinform Comput Biol· June 2011

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Design and implementation of a domain specific language for phylogenetic inference.
Enrico Pontelli, Desh Ranjan, Gopal Gupta, Brook Milligan

J Bioinform Comput Biol· July 2003

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