Publications by authors named "Desi Shang"

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CPRCSdb: A comprehensive phenotype-associated single-cell transcriptomic database for human cancer.
Yizhen Gong, Yuxiang Yan, Zhaomeng Liu, Han Zhang, Jinxiu Deng, Desi Shang

Comput Struct Biotechnol J· December 2025

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CCCdb: a comprehensive manually curated database for cell-cell communication in human and mouse.
Mingcong Xu, Guorui Zhang, Xuan Wang, Yiqing Chen, Chenchen Feng, Desi Shang

Nucleic Acids Res· November 2025

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SpatialRef: a reference of spatial omics with known spot annotation.
Ting Cui, Yan-Yu Li, Bing-Long Li, Han Zhang, Ting-Ting Yu, De-Si Shang

Nucleic Acids Res· January 2025

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SpaGraphCCI: Spatial cell-cell communication inference through GAT-based co-convolutional feature integration.
Han Zhang, Ting Cui, Xiaoqiang Xu, Guangyu Sui, Qiaoli Fang, Desi Shang

IET Syst Biol· January 2025

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TFTG: A comprehensive database for human transcription factors and their targets.
Xinyuan Zhou, Liwei Zhou, Fengcui Qian, Jiaxin Chen, Yuexin Zhang, Desi Shang

Comput Struct Biotechnol J· December 2024

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scBlood: A comprehensive single-cell accessible chromatin database of blood cells.
Yu Zhao, Zheng-Min Yu, Ting Cui, Li-Dong Li, Yan-Yu Li, De-Si Shang

Comput Struct Biotechnol J· December 2024

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Cross-modal integration of bulk RNA-seq and single-cell RNA sequencing data to reveal T-cell exhaustion in colorectal cancer.
Mingcong Xu, Guorui Zhang, Ting Cui, Jiaqi Liu, Qiuyu Wang, Desi Shang

J Cell Mol Med· September 2024

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PBAC: A pathway-based attention convolution neural network for predicting clinical drug treatment responses.
Dexun Deng, Xiaoqiang Xu, Ting Cui, Mingcong Xu, Kunpeng Luo, Desi Shang

J Cell Mol Med· May 2024

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LncSEA 2.0: an updated platform for long non-coding RNA related sets and enrichment analysis.
Guorui Zhang, Chao Song, Shifan Fan, Mingxue Yin, Xinyue Wang, Desi Shang

Nucleic Acids Res· January 2024

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Characterization of the metabolic alteration-modulated tumor microenvironment mediated by TP53 mutation and hypoxia.
Kunpeng Luo, Zhipeng Qian, Yanan Jiang, Dongxu Lv, Kaibin Zhu, Desi Shang

Comput Biol Med· September 2023

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-Cardio: A comprehensive analysis platform for cardiovascular-relavant regulation in human and mouse.
Chao Song, Yuexin Zhang, Hong Huang, Yuezhu Wang, Xilong Zhao, Desi Shang

Mol Ther Nucleic Acids· September 2023

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A novel cuproptosis-related diagnostic gene signature and differential expression validation in atherosclerosis.
Yuting Cui, Yanyu Chen, Ni Gan, Man Li, Wei Liao, Desi Shang

Mol Biomed· July 2023

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Landscape and significance of human super enhancer-driven core transcription regulatory circuitry.
Chenchen Feng, Chao Song, Yong Jiang, Jun Zhao, Jian Zhang, Desi Shang

Mol Ther Nucleic Acids· June 2023

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Identification of microsatellite instability and immune-related prognostic biomarkers in colon adenocarcinoma.
Ziquan Sun, Guodong Li, Desi Shang, Jinning Zhang, Lianjie Ai

Front Immunol· October 2022

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GREAP: a comprehensive enrichment analysis software for human genomic regions.
Yongsan Yang, Fengcui Qian, Xuecang Li, Yanyu Li, Liwei Zhou, Desi Shang

Brief Bioinform· September 2022

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The whole transcriptome analysis and the circRNA-lncRNA network construction in arsenic trioxide-treated mice myocardium.
Yanan Jiang, Xiuyun Shen, Chaorun Dong, Fengnan Zhi, Yang Gao, Desi Shang

Biomed Pharmacother· July 2022

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A Pyroptosis-Related Signature Predicts Overall Survival and Immunotherapy Responses in Lung Adenocarcinoma.
Kaibin Zhu, An Yan, Fucheng Zhou, Su Zhao, Jinfeng Ning, Desi Shang

Front Genet· June 2022

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Heterogeneity analysis of the immune microenvironment in laryngeal carcinoma revealed potential prognostic biomarkers.
Zhipeng Qian, Desi Shang, Lin Fan, Jiarui Zhang, Linhao Ji

Hum Mol Genet· May 2022

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Comprehensive molecular characterization of hypertension-related genes in cancer.
Yanan Jiang, Chunpeng Shi, Songyu Tian, Fengnan Zhi, Xiuyun Shen, Desi Shang

Cardiooncology· May 2022

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TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse.
Yuexin Zhang, Chao Song, Yimeng Zhang, Yuezhu Wang, Chenchen Feng, Desi Shang

Nucleic Acids Res· January 2022

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TF-Marker: a comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human.
Mingcong Xu, Xuefeng Bai, Bo Ai, Guorui Zhang, Chao Song, Desi Shang

Nucleic Acids Res· January 2022

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Identifying individualized risk subpathways reveals pan-cancer molecular classification based on multi-omics data.
Yanjun Xu, Jingwen Wang, Feng Li, Chunlong Zhang, Xuan Zheng, Desi Shang

Comput Struct Biotechnol J· January 2022

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Identification and Validation of an Immune and Ferroptosis-Combined Index for Non-Small Cell Lung Cancer.
Yang Teng, Bo Wang, Desi Shang, Ning Yang

Front Genet· November 2021

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Cancer CRC: A Comprehensive Cancer Core Transcriptional Regulatory Circuit Resource and Analysis Platform.
Ling Wei, Jiaxin Chen, Chao Song, Yuexin Zhang, Yimeng Zhang, Desi Shang

Front Oncol· October 2021

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Comprehensive characterization of a drug-resistance-related ceRNA network across 15 anti-cancer drug categories.
Bing Liu, Xiaorui Zhou, Dongyuan Wu, Xuesong Zhang, Xiuyun Shen, Desi Shang

Mol Ther Nucleic Acids· June 2021

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