Publications by authors named "Dev Paudel"

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In Silico Analysis of Protease Inhibitors in Three Solanaceous Crops Identifies Potential Candidates for Phytopathogen and Plant Pest Management.
Dhirendra Niroula, Amy O Charkowski, Dev Paudel, Janak R Joshi

Phytopathology· December 2025

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A chromosome-scale and haplotype-resolved genome assembly of tetraploid blackberry ( L. subgenus Watson).
Dev Paudel, S Brooks Parrish, Ze Peng, Saroj Parajuli, Zhanao Deng

Hortic Res· June 2025

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Development of circular AAV cargos for targeted seamless insertion with large serine integrases.
Brett J G Estes, Nisha Gandhi, Jessica R Von Stetina, Dev Paudel, Angela X Nan

Mol Ther Methods Clin Dev· June 2025

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Plant necrotrophic bacterial disease resistance phenotypes, QTL, and metabolites identified through integrated genetic mapping and metabolomics in species.
Janak R Joshi, Dev Paudel, Ethan Eddy, Amy O Charkowski, Adam L Heuberger

Front Plant Sci· March 2024

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Transcriptome analysis of Lantana camara flower petals reveals candidate anthocyanin biosynthesis genes mediating red flower color development.
Stephen Brooks Parrish, Dev Paudel, Zhanao Deng

G3 (Bethesda)· December 2023

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Elucidating the effects of organic vs. conventional cropping practice and rhizobia inoculation on rhizosphere microbial diversity and yield of peanut.
Dev Paudel, Liping Wang, Ravin Poudel, Janam P Acharya, Samantha Victores

Environ Microbiome· July 2023

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Genome-Wide Analysis of Gene Family Identifies a Candidate Associated with Fruit Size in Loquat ( Lindl.).
Ze Peng, Wenxiang Li, Xiaoqing Gan, Chongbin Zhao, Dev Paudel

Int J Mol Sci· October 2022

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Advances in Genomics Approaches Shed Light on Crop Domestication.
Yang Zhao, Mengfan Feng, Dev Paudel, Tofazzal Islam, Aliya Momotaz

Plants (Basel)· July 2021

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Genome-Wide Association Study Reveals Candidate Genes for Flowering Time in Cowpea ( [L.] Walp.).
Dev Paudel, Rocheteau Dareus, Julia Rosenwald, María Muñoz-Amatriaín, Esteban F Rios

Front Genet· June 2021

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Methods for Target Enrichment Sequencing via Probe Capture in Legumes.
Ze Peng, Dev Paudel, Liping Wang, Ziliang Luo, Qian You

Methods Mol Biol· January 2021

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Comparison of SNP Calling Pipelines and NGS Platforms to Predict the Genomic Regions Harboring Candidate Genes for Nodulation in Cultivated Peanut.
Ze Peng, Zifan Zhao, Josh Paul Clevenger, Ye Chu, Dev Paudel

Front Genet· March 2020

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Isolation, Characterization, and Complete Genome Sequence of a Strain Lb8 From Nodules of Peanut Utilizing Crack Entry Infection.
Dev Paudel, Fengxia Liu, Liping Wang, Matthew Crook, Stephanie Maya

Front Microbiol· February 2020

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Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a 'sweet' crop with 'bitter' genomes.
Xiping Yang, Jian Song, James Todd, Ze Peng, Dev Paudel

Plant Biotechnol J· February 2019

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Surveying the genome and constructing a high-density genetic map of napiergrass (Cenchrus purpureus Schumach).
Dev Paudel, Baskaran Kannan, Xiping Yang, Karen Harris-Shultz, Mahendar Thudi

Sci Rep· September 2018

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Target enrichment sequencing in cultivated peanut (Arachis hypogaea L.) using probes designed from transcript sequences.
Ze Peng, Wen Fan, Liping Wang, Dev Paudel, Dante Leventini

Mol Genet Genomics· October 2017

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Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.
Rajeev K Varshney, Chengcheng Shi, Mahendar Thudi, Cedric Mariac, Jason Wallace, Dev R Paudel

Nat Biotechnol· October 2017

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Mining sequence variations in representative polyploid sugarcane germplasm accessions.
Xiping Yang, Jian Song, Qian You, Dev R Paudel, Jisen Zhang

BMC Genomics· August 2017

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Transcriptome profiles reveal gene regulation of peanut (Arachis hypogaea L.) nodulation.
Ze Peng, Fengxia Liu, Liping Wang, Hai Zhou, Dev Paudel

Sci Rep· January 2017

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Enriching Genomic Resources and Marker Development from Transcript Sequences of for Microgravity Studies.
Wenlan Tian, Dev Paudel, Wagner Vendrame, Jianping Wang

Int J Genomics· January 2017

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