Publications by authors named "Dezso Modos"

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Deciphering the microbiome-metabolome landscape of an inflammatory bowel disease inception cohort.
Shiva T Radhakrishnan, Benjamin H Mullish, Marton L Olbei, Nathan P Danckert, Maria A Valdivia-Garcia, Dezso Modos

Gut Microbes· December 2025

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OmniPath: integrated knowledgebase for multi-omics analysis.
Dénes Türei, Jonathan Schaul, Nicolàs Palacio-Escat, Balázs Bohár, Yunfan Bai

Nucleic Acids Res· November 2025

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Decoding non-coding SNPs: systems genomics modelling dissects the heterogeneity of IBD.
Dezső Módos, John P Thomas, Johanne Brooks-Warburton, Martina Poletti, Balazs Bohar

Mol Syst Biol· November 2025

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Patient-Specific Regulatory Network Rewiring in Inflammatory Bowel Disease: How Genetic Polymorphisms Divert Incoming Signals and Contribute to Disease Pathogenesis.
Balazs Bohar, John P Thomas, Yufan Liu, Johanne Brooks-Warburton, Bram Verstockt, Dezso Modos

Inflamm Bowel Dis· October 2025

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Protocol for predicting host-microbe interactions and their downstream effect on host cells using MicrobioLink.
Lejla Gul, Anna Julia Elias, Tanvi Tambaku, Marton Olbei, Emily Watters, Dezso Modos

STAR Protoc· March 2025

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AutophagyNet: high-resolution data source for the analysis of autophagy and its regulation.
Luca Csabai, Balázs Bohár, Dénes Türei, Sowmya Prabhu, László Földvári-Nagy

Autophagy· January 2024

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Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways.
Martina Poletti, Agatha Treveil, Luca Csabai, Leila Gul, Dezso Modos

NPJ Syst Biol Appl· May 2022

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A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis.
Johanne Brooks-Warburton, Dezso Modos, Padhmanand Sudhakar, Matthew Madgwick, John P Thomas

Nat Commun· April 2022

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Targeting Cell Death Mechanism Specifically in Triple Negative Breast Cancer Cell Lines.
Lavinia-Lorena Pruteanu, Cornelia Braicu, Dezső Módos, Maria-Ancuţa Jurj, Lajos-Zsolt Raduly

Int J Mol Sci· April 2022

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The Emerging Role of Bile Acids in the Pathogenesis of Inflammatory Bowel Disease.
John P Thomas, Dezso Modos, Simon M Rushbrook, Nick Powell, Tamas Korcsmaros

Front Immunol· March 2022

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Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data.
John P Thomas, Marton Ölbei, Johanne Brooks-Warburton, Tamas Korcsmaros, Dezso Modos

Genes (Basel)· February 2022

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SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks.
Luca Csabai, Dávid Fazekas, Tamás Kadlecsik, Máté Szalay-Bekő, Balázs Bohár

Nucleic Acids Res· January 2022

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Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell-type specific manner that are altered in inflammatory bowel disease.
Lejla Gul, Dezso Modos, Sonia Fonseca, Matthew Madgwick, John P Thomas

J Extracell Vesicles· January 2022

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COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Dezso Modos

Mol Syst Biol· December 2021

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms.
Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Dezso Modos

Mol Syst Biol· October 2021

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Network Biology Approaches to Achieve Precision Medicine in Inflammatory Bowel Disease.
John P Thomas, Dezso Modos, Tamas Korcsmaros, Johanne Brooks-Warburton

Front Genet· October 2021

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A handy meta-analysis tool for IBD research.
Dezso Modos, John P Thomas, Tamas Korcsmaros

Nat Comput Sci· September 2021

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CytokineLink: A Cytokine Communication Map to Analyse Immune Responses-Case Studies in Inflammatory Bowel Disease and COVID-19.
Marton Olbei, John P Thomas, Isabelle Hautefort, Agatha Treveil, Balazs Bohar, Dezso Modos

Cells· August 2021

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Towards understanding antimicrobial activity, cytotoxicity and the mode of action of dichapetalins A and M using in silico and in vitro studies.
Mary Anti Chama, Dezso Modos, Lewis Howard Mervin, Kofi Baffour-Awuah Owusu, Daniel Moscoh Ayine-Tora

Toxicon· April 2021

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SARS-CoV-2 Causes a Different Cytokine Response Compared to Other Cytokine Storm-Causing Respiratory Viruses in Severely Ill Patients.
Marton Olbei, Isabelle Hautefort, Dezso Modos, Agatha Treveil, Martina Poletti

Front Immunol· April 2021

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Integrated intra- and intercellular signaling knowledge for multicellular omics analysis.
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio-Escat, Michal Klein

Mol Syst Biol· March 2021

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ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways.
Agatha Treveil, Balazs Bohar, Padhmanand Sudhakar, Lejla Gul, Luca Csabai, Dezso Modos

PLoS Comput Biol· February 2021

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Transcriptomics predicts compound synergy in drug and natural product treated glioblastoma cells.
Lavinia-Lorena Pruteanu, Liliya Kopanitsa, Dezső Módos, Edgars Kletnieks, Elena Samarova

PLoS One· November 2020

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ADDI: Recommending alternatives for drug-drug interactions with negative health effects.
Milad Allahgholi, Hossein Rahmani, Delaram Javdani, Gerhard Weiss, Dezső Módos

Comput Biol Med· October 2020

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EMDIP: An Entropy Measure to Discover Important Proteins in PPI networks.
Hamid Bashiri, Hossein Rahmani, Vahid Bashiri, Dezső Módos, Andreas Bender

Comput Biol Med· May 2020

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