Publications by authors named "Dimitri Perrin"

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Leveraging uncertainty quantification to optimize CRISPR guide RNA selection.
Carl Schmitz, Jacob Bradford, Robert Salomone, Dimitri Perrin

Biol Methods Protoc· December 2025

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Democratising high performance computing for bioinformatics through serverless cloud computing: A case study on CRISPR-Cas9 guide RNA design with Crackling Cloud.
Jacob Bradford, Divya Joy, Mattias Winsen, Nicholas Meurant, Mackenzie Wilkins, Dimitri Perrin

PLoS Comput Biol· December 2025

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Circadian ribosome profiling reveals a role for the upstream open reading frame in sleep.
Arthur Millius, Rikuhiro G Yamada, Hiroshi Fujishima, Kazuhiko Maeda, Daron M Standley, Dimitri Perrin

Proc Natl Acad Sci U S A· October 2023

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Role of the bicarbonate transporter SLC4γ in stony-coral skeleton formation and evolution.
Amanda I Tinoco, Lorna M Y Mitchison-Field, Jacob Bradford, Christian Renicke, Dimitri Perrin

Proc Natl Acad Sci U S A· June 2023

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Predicting Carcass Weight of Grass-Fed Beef Cattle before Slaughter Using Statistical Modelling.
Kalpani Ishara Duwalage, Moe Thandar Wynn, Kerrie Mengersen, Dale Nyholt, Dimitri Perrin

Animals (Basel)· June 2023

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Rapid Whole-Genome Identification of High Quality CRISPR Guide RNAs with the Crackling Method.
Jacob Bradford, Timothy Chappell, Dimitri Perrin

CRISPR J· June 2022

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Molecular and Serologic Diagnostic Technologies for SARS-CoV-2.
Halie M Rando, Christian Brueffer, Ronan Lordan, Anna Ada Dattoli, David Manheim, Dimitri Perrin

ArXiv· April 2022

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Metagenomic Geolocation Using Read Signatures.
Timothy Chappell, Shlomo Geva, James M Hogan, David Lovell, Andrew Trotman, Dimitri Perrin

Front Genet· February 2022

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Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
Solveig K Sieberts, Jennifer Schaff, Marlena Duda, Bálint Ármin Pataki, Ming Sun, Dimitri Perrin

NPJ Digit Med· March 2021

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Reduced thermal tolerance in a coral carrying CRISPR-induced mutations in the gene for a heat-shock transcription factor.
Phillip A Cleves, Amanda I Tinoco, Jacob Bradford, Dimitri Perrin, Line K Bay

Proc Natl Acad Sci U S A· November 2020

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Evaluation of Combined Artificial Intelligence and Radiologist Assessment to Interpret Screening Mammograms.
Thomas Schaffter, Diana S M Buist, Christoph I Lee, Yaroslav Nikulin, Dezso Ribli, Dimitri Perrin

JAMA Netw Open· March 2020

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Improving CRISPR guide design with consensus approaches.
Jacob Bradford, Dimitri Perrin

BMC Genomics· December 2019

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Recursive module extraction using Louvain and PageRank.
Dimitri Perrin, Guido Zuccon

F1000Res· November 2019

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A benchmark of computational CRISPR-Cas9 guide design methods.
Jacob Bradford, Dimitri Perrin

PLoS Comput Biol· August 2019

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Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2.
Bo Zhou, Steve S Ho, Stephanie U Greer, Noah Spies, John M Bell, Dimitri Perrin

Nucleic Acids Res· May 2019

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Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.
Bo Zhou, Steve S Ho, Stephanie U Greer, Xiaowei Zhu, John M Bell, Dimitri Perrin

Genome Res· March 2019

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Promises and Challenges in the Use of Consumer-Grade Devices for Sleep Monitoring.
Sirinthip Roomkham, David Lovell, Joseph Cheung, Dimitri Perrin

IEEE Rev Biomed Eng· December 2018

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Neural network analysis of sleep stages enables efficient diagnosis of narcolepsy.
Jens B Stephansen, Alexander N Olesen, Mads Olsen, Aditya Ambati, Eileen B Leary, Dimitri Perrin

Nat Commun· December 2018

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Rapid analysis of metagenomic data using signature-based clustering.
Timothy Chappell, Shlomo Geva, James M Hogan, Flavia Huygens, Irani U Rathnayake, Dimitri Perrin

BMC Bioinformatics· December 2018

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Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep.
Yasutaka Niwa, Genki N Kanda, Rikuhiro G Yamada, Shoi Shi, Genshiro A Sunagawa, Dimitri Perrin

Cell Rep· August 2018

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Performance of Registration Tools on High-Resolution 3D Brain Images.
Abdullah Nazib, James Galloway, Clinton Fookes, Dimitri Perrin

Annu Int Conf IEEE Eng Med Biol Soc· July 2018

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Involvement of Ca(2+)-Dependent Hyperpolarization in Sleep Duration in Mammals.
Fumiya Tatsuki, Genshiro A Sunagawa, Shoi Shi, Etsuo A Susaki, Hiroko Yukinaga, Dimitri Perrin

Neuron· April 2016

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Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.
Genshiro A Sunagawa, Kenta Sumiyama, Maki Ukai-Tadenuma, Dimitri Perrin, Hiroshi Fujishima

Cell Rep· January 2016

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Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.
Etsuo A Susaki, Kazuki Tainaka, Dimitri Perrin, Hiroko Yukinaga, Akihiro Kuno

Nat Protoc· November 2015

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Whole-body imaging with single-cell resolution by tissue decolorization.
Kazuki Tainaka, Shimpei I Kubota, Takeru Q Suyama, Etsuo A Susaki, Dimitri Perrin

Cell· November 2014

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