Publications by authors named "Dimitris Anastassiou"

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The Role of Recruited Adipose Stromal Cells and Their Fibroblastic Differentiation in Cancer.
Lingyi Cai, Mikhail G Kolonin, Dimitris Anastassiou

Front Biosci (Landmark Ed)· August 2025

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Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction.
Adriana Salcedo, Maxime Tarabichi, Alex Buchanan, Shadrielle M G Espiritu, Hongjiu Zhang, Dimitris Anastassiou

Nat Biotechnol· April 2025

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The fibro-adipogenic progenitor APOD+DCN+LUM+ cell population in aggressive carcinomas.
Lingyi Cai, Mikhail G Kolonin, Dimitris Anastassiou

Cancer Metastasis Rev· September 2024

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CASCC: a co-expression-assisted single-cell RNA-seq data clustering method.
Lingyi Cai, Dimitris Anastassiou

Bioinformatics· May 2024

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Adipose Stromal Cell-Derived Cancer-Associated Fibroblasts Suppress FGFR Inhibitor Efficacy.
Mikhail G Kolonin, Dimitris Anastassiou

Cancer Res· March 2024

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Characterizing Intra-Tumor Heterogeneity From Somatic Mutations Without Copy-Neutral Assumption.
Oyetunji E Ogundijo, Kaiyi Zhu, Xiaodong Wang, Dimitris Anastassiou

IEEE/ACM Trans Comput Biol Bioinform· January 2022

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Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts.
Kaiyi Zhu, Lingyi Cai, Chenqian Cui, Juan R de Los Toyos, Dimitris Anastassiou

PLoS Comput Biol· July 2021

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Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis.
Gaojianyong Wang, Dimitris Anastassiou

Sci Rep· October 2020

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2DImpute: imputation in single-cell RNA-seq data from correlations in two dimensions.
Kaiyi Zhu, Dimitris Anastassiou

Bioinformatics· June 2020

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A community effort to create standards for evaluating tumor subclonal reconstruction.
Adriana Salcedo, Maxime Tarabichi, Shadrielle Melijah G Espiritu, Amit G Deshwar, Matei David, Dimitris Anastassiou

Nat Biotechnol· January 2020

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A sequential Monte Carlo algorithm for inference of subclonal structure in cancer.
Oyetunji E Ogundijo, Kaiyi Zhu, Xiaodong Wang, Dimitris Anastassiou

PLoS One· October 2019

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Dimitris Anastassiou

Immunity· August 2019

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Meta-analysis of expression and methylation signatures indicates a stress-related epigenetic mechanism in multiple neuropsychiatric disorders.
Kaiyi Zhu, Tai-Hsien Ou Yang, Vincent Dorie, Tian Zheng, Dimitris Anastassiou

Transl Psychiatry· January 2019

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The Immune Landscape of Cancer.
Vésteinn Thorsson, David L Gibbs, Scott D Brown, Denise Wolf, Dante S Bortone, Dimitris Anastassiou

Immunity· April 2018

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Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants.
Abdulkadir Elmas, Tai-Hsien Ou Yang, Xiaodong Wang, Dimitris Anastassiou

PLoS One· July 2017

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Comment on "A COL11A1-correlated pan-cancer gene signature of activated fibroblasts for the prioritization of therapeutic targets," Cancer Lett. 2016 Nov 28; 382 (2): 203-214.
Dimitris Anastassiou

Cancer Lett· May 2017

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Breast cancer prognostic biomarker using attractor metagenes and the FGD3-SUSD3 metagene.
Tai-Hsien Ou Yang, Wei-Yi Cheng, Tian Zheng, Matthew A Maurer, Dimitris Anastassiou

Cancer Epidemiol Biomarkers Prev· December 2014

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A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data.
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang

EURASIP J Bioinform Syst Biol· May 2014

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JAK2 expression is associated with tumor-infiltrating lymphocytes and improved breast cancer outcomes: implications for evaluating JAK2 inhibitors.
Chris P Miller, Jason D Thorpe, Amanda N Kortum, Catherine M Coy, Wei-Yi Cheng, Dimitris Anastassiou

Cancer Immunol Res· April 2014

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Biomolecular events in cancer revealed by attractor metagenes.
Wei-Yi Cheng, Tai-Hsien Ou Yang, Dimitris Anastassiou

PLoS Comput Biol· October 2013

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Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA.
Guido H Jajamovich, Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang

BMC Bioinformatics· September 2013

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Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis.
Sonia L Hernandez, Debarshi Banerjee, Alejandro Garcia, Thaned Kangsamaksin, Wei-Yi Cheng, Dimitris Anastassiou

Vasc Cell· September 2013

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Development of a prognostic model for breast cancer survival in an open challenge environment.
Wei-Yi Cheng, Tai-Hsien Ou Yang, Dimitris Anastassiou

Sci Transl Med· April 2013

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Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data.
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang

BMC Genet· October 2012

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A unified framework for haplotype inference in nuclear families.
Alexandros Iliadis, Dimitris Anastassiou, Xiaodong Wang

Ann Hum Genet· July 2012

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