Publications by authors named "Dipti D Nayak"

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An archaeal transcription factor bridges prokaryotic and eukaryotic regulatory paradigms.
Fernando Medina Ferrer, Dipti D Nayak

Cell· December 2025

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Corrigendum to "Assembly and maturation of methyl-coenzyme M reductase in methanogenic archaea" [Curr Opin Microbiol, 87 (2025) 102637].
Sophia A Adler, Grayson L Chadwick, Dipti D Nayak

Curr Opin Microbiol· December 2025

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Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage.
Katie E Shalvarjian, Grayson L Chadwick, Paloma I Pérez, Philip H Woods, Victoria J Orphan, Dipti D Nayak

Proc Natl Acad Sci U S A· November 2025

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Histones and nucleoid-associated proteins in mediate recovery from stress and stasis.
Alienor S Baskevitch, Dipti D Nayak

bioRxiv· November 2025

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Genus-specific remodeling of carbon and energy metabolism facilitates acetoclastic methanogenesis in spp. and spp.
Blake E Downing, Dinesh Gupta, Katie E Shalvarjian, Dipti D Nayak

bioRxiv· October 2025

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Assembly and maturation of methyl-coenzyme M reductase in methanogenic archaea.
Sophia A Adler, Grayson L Chadwick, Dipti D Nayak

Curr Opin Microbiol· September 2025

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Structure of an archaeal ribosome reveals a divergent active site and hibernation factor.
Amos J Nissley, Yekaterina Shulgina, Roan W Kivimae, Blake E Downing, Petar I Penev, Dipti D Nayak

Nat Microbiol· August 2025

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Modulation of methyl-coenzyme M reductase expression alters the isotopic composition of microbial methane.
Jonathan Gropp, Markus Bill, Max K Lloyd, Rebekah A Stein, Dipti D Nayak

Science· August 2025

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Innovations in the electron transport chain fuel archaeal methane metabolism.
Blake E Downing, Dipti D Nayak

Trends Biochem Sci· May 2025

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Methanogenesis marker 16 metalloprotein is the primary coenzyme M synthase in Methanosarcina acetivorans.
Grayson L Chadwick, Madison C Williams, Katie E Shalvarjian, Dipti D Nayak

PLoS Genet· May 2025

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Methanogenesis marker 16 metalloprotein is the primary coenzyme M synthase in .
Grayson L Chadwick, Madison C Williams, Katie E Shalvarjian, Dipti D Nayak

bioRxiv· February 2025

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Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in .
Grayson L Chadwick, Gavin A Dury, Dipti D Nayak

Appl Environ Microbiol· July 2024

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No evidence for methanotrophic growth of diverse marine methanogens.
Grayson L Chadwick, Dipti D Nayak, Michael Rother, William W Metcalf

Proc Natl Acad Sci U S A· May 2024

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MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in Methanosarcina acetivorans.
Dinesh Gupta, Keying Chen, Sean J Elliott, Dipti D Nayak

Nat Commun· April 2024

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McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.
Grayson L Chadwick, Aaron M N Joiner, Sangeetha Ramesh, Douglas A Mitchell, Dipti D Nayak

Proc Natl Acad Sci U S A· June 2023

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MmcA is an electron conduit that facilitates both intracellular and extracellular electron transport in .
Dinesh Gupta, Keying Chen, Sean J Elliott, Dipti D Nayak

bioRxiv· April 2023

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The dual role of a multi-heme cytochrome in methanogenesis: MmcA is important for energy conservation and carbon metabolism in Methanosarcina acetivorans.
Blake E Downing, Dinesh Gupta, Dipti D Nayak

Mol Microbiol· March 2023

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An Archaea-specific -type cytochrome maturation machinery is crucial for methanogenesis in .
Dinesh Gupta, Katie E Shalvarjian, Dipti D Nayak

Elife· April 2022

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EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde.
Jannell V Bazurto, Dipti D Nayak, Tomislav Ticak, Milya Davlieva, Jessica A Lee

PLoS Biol· May 2021

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Transcriptional regulation of methanogenic metabolism in archaea.
Katie E Shalvarjian, Dipti D Nayak

Curr Opin Microbiol· April 2021

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Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans.
Dipti D Nayak, Andi Liu, Neha Agrawal, Roy Rodriguez-Carerro, Shi-Hui Dong

PLoS Biol· February 2020

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Methylamine-specific methyltransferase paralogs in Methanosarcina are functionally distinct despite frequent gene conversion.
Dipti D Nayak, William W Metcalf

ISME J· September 2019

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Genetic techniques for studies of methyl-coenzyme M reductase from Methanosarcina acetivorans C2A.
Dipti D Nayak, William W Metcalf

Methods Enzymol· August 2019

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Post-translational thioamidation of methyl-coenzyme M reductase, a key enzyme in methanogenic and methanotrophic Archaea.
Dipti D Nayak, Nilkamal Mahanta, Douglas A Mitchell, William W Metcalf

Elife· September 2017

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Cas9-mediated genome editing in the methanogenic archaeon .
Dipti D Nayak, William W Metcalf

Proc Natl Acad Sci U S A· March 2017

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