Publications by authors named "Dirar Homouz"

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Effect of catalyst in the synthesis of orange peel biomass derived CNTs.
Sadika Farsana, Moh'd Rezeq, Sufian Abedrabbo, Dirar Homouz, Shashikant P Patole

Sci Rep· July 2025

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Investigating the thermodynamics properties of water confined in carbon nanotubes using molecular dynamics simulations.
Amit Srivastava, Gobind Das, Sufian Abedrabbo, Jamal Hassan, Dirar Homouz

Sci Rep· July 2025

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Deciphering the structural consequences of R83 and R152 methylation on DNA polymerase β using molecular modeling.
Amit Srivastava, Haitham Idriss, Gobind Das, Sufian Abedrabbo, Mohd Sahir Shamsir, Dirar Homouz

PLoS One· May 2025

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Analysis of Cancer-Associated Mutations of POLB Using Machine Learning and Bioinformatics.
Razan Alkhanbouli, Amira Al-Aamri, Maher Maalouf, Kamal Taha, Andreas Henschel, Dirar Homouz

IEEE/ACM Trans Comput Biol Bioinform· October 2024

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Dynamics of confined water inside carbon nanotubes based on studying tetrahedral order parameters.
Amit Srivastava, Sufian Abedrabbo, Jamal Hassan, Dirar Homouz

Sci Rep· July 2024

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Inhibition of the Early-Stage Cross-Amyloid Aggregation of Amyloid-β and IAPP via EGCG: Insights from Molecular Dynamics Simulations.
Amit Srivastava, Kenana Al Adem, Aya Shanti, Sungmun Lee, Sufian Abedrabbo, Dirar Homouz

ACS Omega· July 2024

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Structural Insights into Phosphorylation-Mediated Polymerase Function Loss for DNA Polymerase Bound to Gapped DNA.
Amit Srivastava, Haitham Idriss, Dirar Homouz

Int J Mol Sci· May 2023

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Inferring Gene Regulatory Networks from RNA-seq Data Using Kernel Classification.
Amira Al-Aamri, Andrzej S Kudlicki, Maher Maalouf, Kamal Taha, Dirar Homouz

Biology (Basel)· March 2023

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Hydrogen Bond Dynamics and Phase Transitions of Water inside Carbon Nanotubes.
Amit Srivastava, Jamal Hassan, Dirar Homouz

Nanomaterials (Basel)· January 2023

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Phosphorylation Induced Conformational Transitions in DNA Polymerase .
Amit Srivastava, Haitham Idriss, Kamal Taha, Sungmun Lee, Dirar Homouz

Front Mol Biosci· June 2022

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Linking Alzheimer's Disease and Type 2 Diabetes: Characterization and Inhibition of Cytotoxic Aβ and IAPP Hetero-Aggregates.
Kenana Al Adem, Aya Shanti, Amit Srivastava, Dirar Homouz, Sneha Ann Thomas

Front Mol Biosci· March 2022

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Effect of Size and Temperature on Water Dynamics inside Carbon Nano-Tubes Studied by Molecular Dynamics Simulation.
Amit Srivastava, Jamal Hassan, Dirar Homouz

Molecules· October 2021

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The Zero-Order Loop in Apoazurin Modulates Folding Mechanism In Silico.
Fabio C Zegarra, Dirar Homouz, Pernilla Wittung-Stafshede, Margaret S Cheung

J Phys Chem B· April 2021

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Inferring Causation in Yeast Gene Association Networks With Kernel Logistic Regression.
Amira Al-Aamri, Kamal Taha, Maher Maalouf, Andrzej Kudlicki, Dirar Homouz

Evol Bioinform Online· June 2020

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Maximum parsimony interpretation of chromatin capture experiments.
Dirar Homouz, Andrzej S Kudlicki

PLoS One· March 2020

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Critical phenomena in the temperature-pressure-crowding phase diagram of a protein.
Andrei G Gasic, Mayank M Boob, Maxim B Prigozhin, Dirar Homouz, Anna Jean Wirth

Phys Rev X· November 2019

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Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico.
Fabio C Zegarra, Dirar Homouz, Andrei G Gasic, Lucas Babel, Michael Kovermann

J Phys Chem B· May 2019

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Analyzing a co-occurrence gene-interaction network to identify disease-gene association.
Amira Al-Aamri, Kamal Taha, Yousof Al-Hammadi, Maher Maalouf, Dirar Homouz

BMC Bioinformatics· February 2019

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Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA polymerase β activity.
Dirar Homouz, Kwee Hong Joyce-Tan, Mohd ShahirShamsir, Ibrahim M Moustafa, Haitham T Idriss

J Mol Graph Model· September 2018

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Impact of hydrodynamic interactions on protein folding rates depends on temperature.
Fabio C Zegarra, Dirar Homouz, Yossi Eliaz, Andrei G Gasic, Margaret S Cheung

Phys Rev E· March 2018

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Molecular dynamics simulations suggest changes in electrostatic interactions as a potential mechanism through which serine phosphorylation inhibits DNA Polymerase β's activity.
Dirar Homouz, Kwee Hong Joyce-Tan, Mohd Shahir Shamsir, Ibrahim M Moustafa, Haitham Idriss

J Mol Graph Model· January 2018

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Constructing Genetic Networks using Biomedical Literature and Rare Event Classification.
Amira Al-Aamri, Kamal Taha, Yousof Al-Hammadi, Maher Maalouf, Dirar Homouz

Sci Rep· November 2017

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Applying Monte Carlo Simulation to Biomedical Literature to Approximate Genetic Network.
Rami Al-Dalky, Kamal Taha, Dirar Al Homouz, Murad Qasaimeh

IEEE/ACM Trans Comput Biol Bioinform· September 2017

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Correcting positional correlations in Affymetrix® genome chips.
Dirar Homouz, Gang Chen, Andrzej S Kudlicki

Sci Rep· March 2015

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Simulating protein folding in different environmental conditions.
Dirar Homouz

Adv Exp Med Biol· May 2014

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