Publications by authors named "Dominik Gront"

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Coarse-Grained Protein Models and Their Applications.
Sebastian Kmiecik, Dominik Gront, Michal Kolinski, Lukasz Wieteska, Aleksandra Elzbieta Dawid, Andrzej Kolinski

Chem Rev· July 2016

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Exploring P450 superfamily diversity with P450Atlas - Online tool for automated subfamily assignment.
Dominik Gront, Khajamohiddin Syed, David R Nelson

Protein Sci· March 2025

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deepBBQ: A Deep Learning Approach to the Protein Backbone Reconstruction.
Justyna D Kryś, Maksymilian Głowacki, Piotr Śmieja, Dominik Gront

Biomolecules· November 2024

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Coarse-grained potential for hydrogen bond interactions.
Justyna D Kryś, Dominik Gront

J Mol Graph Model· November 2023

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Automated Protein Secondary Structure Assignment from C Positions Using Neural Networks.
Mohammad N Saqib, Justyna D Kryś, Dominik Gront

Biomolecules· June 2022

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Contrasting Health Effects of and Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters.
Bridget Valeria Zinhle Nkosi, Tiara Padayachee, Dominik Gront, David R Nelson, Khajamohiddin Syed

Int J Mol Sci· May 2022

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Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum .
Siphesihle Msweli, Andiswa Chonco, Lihle Msweli, Puleng Rosinah Syed, Rajshekhar Karpoormath, Dominik Gront

Int J Mol Sci· May 2022

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An Unprecedented Number of Cytochrome P450s Are Involved in Secondary Metabolism in Species.
Nsikelelo Allison Malinga, Nomfundo Nzuza, Tiara Padayachee, Puleng Rosinah Syed, Rajshekhar Karpoormath, Dominik Gront

Microorganisms· April 2022

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Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks.
Julia Koehler Leman, Sergey Lyskov, Steven M Lewis, Jared Adolf-Bryfogle, Rebecca F Alford, Dominik Gront

Nat Commun· November 2021

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VisuaLife: library for interactive visualization in rich web applications.
Justyna D Kryś, Dominik Gront

Bioinformatics· October 2021

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Diversification of Ferredoxins across Living Organisms.
Nomfundo Nzuza, Tiara Padayachee, Wanping Chen, Dominik Gront, David R Nelson

Curr Issues Mol Biol· September 2021

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In Silico Structural Modeling and Analysis of Interactions of Cytochrome P450 Monooxygenases CYP51s with Substrates and Azoles.
Olufunmilayo Olukemi Akapo, Joanna M Macnar, Justyna D Kryś, Puleng Rosinah Syed, Khajamohiddin Syed, Dominik Gront

Int J Mol Sci· July 2021

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Ancient Bacterial Class Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species.
Nomfundo Nzuza, Tiara Padayachee, Puleng Rosinah Syed, Justyna Dorota Kryś, Wanping Chen, Dominik Gront

Int J Mol Sci· May 2021

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In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class .
Ntombizethu Nokuphiwa Msomi, Tiara Padayachee, Nomfundo Nzuza, Puleng Rosinah Syed, Justyna Dorota Kryś, Dominik Gront

Molecules· March 2021

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Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Julia Koehler Leman, Brian D Weitzner, Steven M Lewis, Jared Adolf-Bryfogle, Nawsad Alam, Dominik Gront

Nat Methods· July 2020

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More P450s Are Involved in Secondary Metabolite Biosynthesis in Compared to , , and .
Fanele Cabangile Mnguni, Tiara Padayachee, Wanping Chen, Dominik Gront, Jae-Hyuk Yu

Int J Mol Sci· July 2020

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Better together: Elements of successful scientific software development in a distributed collaborative community.
Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Dominik Gront

PLoS Comput Biol· May 2020

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Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps.
Doo Nam Kim, Dominik Gront, Karissa Y Sanbonmatsu

J Chem Inf Model· May 2020

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BioShell 3.0: Library for Processing Structural Biology Data.
Joanna M Macnar, Natalia A Szulc, Justyna D Kryś, Aleksandra E Badaczewska-Dawid, Dominik Gront

Biomolecules· March 2020

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Comparison of α-Helix and β-Sheet Structure Adaptation to a Quantum Dot Geometry: Toward the Identification of an Optimal Motif for a Protein Nanoparticle Cover.
Katarzyna Kopeć, Marta Pędziwiatr, Dominik Gront, Olga Sztatelman, Jakub Sławski

ACS Omega· August 2019

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Parallel Implementation of a Sequential Markov Chain in Monte Carlo Simulations of Physical Systems with Pairwise Interactions.
Szymon Migacz, Kajetan Dutka, Przemysław Gumienny, Maciej Marchwiany, Dominik Gront

J Chem Theory Comput· May 2019

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Mutation goals in the vitamin D receptor predicted by computational methods.
Wanda Sicinska, Dominik Gront, Kamil Sicinski

J Steroid Biochem Mol Biol· October 2018

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Coarse-Grained Modeling of the Interplay between Secondary Structure Propensities and Protein Fold Assembly.
Aleksandra E Dawid, Dominik Gront, Andrzej Kolinski

J Chem Theory Comput· April 2018

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In silico analysis of cytochrome P450 monooxygenases in chronic granulomatous infectious fungus Sporothrix schenckii: Special focus on CYP51.
Retshedisitswe Godfrey Matowane, Lukasz Wieteska, Hans Denis Bamal, Ipeleng Kopano Rosinah Kgosiemang, Mari Van Wyk, Dominik Gront

Biochim Biophys Acta Proteins Proteom· January 2018

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SURPASS Low-Resolution Coarse-Grained Protein Modeling.
Aleksandra E Dawid, Dominik Gront, Andrzej Kolinski

J Chem Theory Comput· November 2017

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