Publications by authors named "Donald F Senear"

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The cooperative binding energetics of CytR and cAMP receptor protein support a quantitative model of differential activation and repression of CytR-regulated class III Escherichia coli promoters.
Allison K Holt, Donald F Senear

Biochemistry· November 2013

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Structures of oncogenic, suppressor and rescued p53 core-domain variants: mechanisms of mutant p53 rescue.
Brad D Wallentine, Ying Wang, Vira Tretyachenko-Ladokhina, Martha Tan, Donald F Senear

Acta Crystallogr D Biol Crystallogr· October 2013

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Multiple conformations of the cytidine repressor DNA-binding domain coalesce to one upon recognition of a specific DNA surface.
Colleen L Moody, Vira Tretyachenko-Ladokhina, Thomas M Laue, Donald F Senear, Melanie J Cocco

Biochemistry· August 2011

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An unusual pattern of CytR and CRP binding energetics at Escherichia coli cddP suggests a unique blend of class I and class II mediated activation.
Allison K Holt, Donald F Senear

Biochemistry· January 2010

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Molecular mechanisms of functional rescue mediated by P53 tumor suppressor mutations.
Yu-Hong Tan, Y Morris Chen, Xiang Ye, Qiang Lu, Vira Tretyachenko-Ladokhina, Donald F Senear

Biophys Chem· November 2009

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Pressure dissociation of integration host factor-DNA complexes reveals flexibility-dependent structural variation at the protein-DNA interface.
Donald F Senear, Vira Tretyachenko-Ladokhina, Michael L Opel, Kimberly A Aeling, G Wesley Hatfield

Nucleic Acids Res· May 2007

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DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions.
Kimberly A Aeling, Nicholas R Steffen, Matthew Johnson, G Wesley Hatfield, Richard H Lathrop, Donald F Senear

IEEE/ACM Trans Comput Biol Bioinform· April 2007

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Indirect recognition in sequence-specific DNA binding by Escherichia coli integration host factor: the role of DNA deformation energy.
Kimberly A Aeling, Michael L Opel, Nicholas R Steffen, Vira Tretyachenko-Ladokhina, G Wesley Hatfield, Donald F Senear

J Biol Chem· December 2006

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Flexibility and adaptability in binding of E. coli cytidine repressor to different operators suggests a role in differential gene regulation.
Vira Tretyachenko-Ladokhina, Melanie J Cocco, Donald F Senear

J Mol Biol· September 2006

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Role of protein-protein bridging interactions on cooperative assembly of DNA-bound CRP-CytR-CRP complex and regulation of the Escherichia coli CytR regulon.
Mayy Chahla, John Wooll, Thomas M Laue, Nghia Nguyen, Donald F Senear

Biochemistry· April 2003

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Alexa and Oregon Green dyes as fluorescence anisotropy probes for measuring protein-protein and protein-nucleic acid interactions.
Elena Rusinova, Vira Tretyachenko-Ladokhina, Oana E Vele, Donald F Senear, J B Alexander Ross

Anal Biochem· September 2002

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Thermodynamics of E. coli cytidine repressor interactions with DNA: distinct modes of binding to different operators suggests a role in differential gene regulation.
Vira Tretyachenko-Ladokhina, J B Alexander Ross, Donald F Senear

J Mol Biol· February 2002

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Quantitative analysis of tryptophan analogue incorporation in recombinant proteins.
Donald F Senear, Robert A Mendelson, Deborah B Stone, Linda A Luck, Elena Rusinova

Anal Biochem· January 2002

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