Publications by authors named "Dylan Fong"

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Cytoscape Web: bringing network biology to the browser.
Keiichiro Ono, Dylan Fong, Chengzhan Gao, Christopher Churas, Rudolf Pillich

Nucleic Acids Res· July 2025

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Cell Mapping Toolkit: an end-to-end pipeline for mapping subcellular organization.
Joanna Lenkiewicz, Christopher Churas, Mengzhou Hu, Gege Qian, Mayank Jain, Dylan Fong

Bioinformatics· June 2025

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Integrated multi-omic characterizations of the synapse reveal RNA processing factors and ubiquitin ligases associated with neurodevelopmental disorders.
Yuan Mei, Maya L Gosztyla, Xinzhu Tan, Lara E Dozier, Brent Wilkinson, Dylan Fong

Cell Syst· April 2025

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Evaluation of large language models for discovery of gene set function.
Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf T Pillich, Dylan Fong

Nat Methods· January 2025

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Evaluation of large language models for discovery of gene set function.
Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf T Pillich, Dylan Fong

ArXiv· April 2024

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NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange.
Rudolf T Pillich, Jing Chen, Christopher Churas, Dylan Fong, Benjamin M Gyori

Bioinformatics· March 2023

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Cytoscape.js 2023 update: a graph theory library for visualization and analysis.
Max Franz, Christian T Lopes, Dylan Fong, Mike Kucera, Manfred Cheung

Bioinformatics· January 2023

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Author-sourced capture of pathway knowledge in computable form using Biofactoid.
Jeffrey V Wong, Max Franz, Metin Can Siper, Dylan Fong, Funda Durupinar

Elife· December 2021

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Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.
Igor Rodchenkov, Ozgun Babur, Augustin Luna, Bulent Arman Aksoy, Jeffrey V Wong, Dylan Fong

Nucleic Acids Res· January 2020

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