Publications by authors named "Dylan Girodat"

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Solution structure determination and biophysical characterization studies of 7SK RNP and 7SL SRP RNAs.
Michael H D'Souza, Higor S Pereira, Scott Tersteeg, Gunjan Vasudeva, M Quadir Siddiqui, Dylan Girodat

RNA· September 2025

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Human protein synthesis requires aminoacyl-tRNA pivoting during proofreading.
Divya Sapkota, Karissa Y Sanbonmatsu, Dylan Girodat

Nat Commun· September 2025

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Human Protein Synthesis Requires aminoacyl-tRNA Pivoting During Proofreading.
Divya Sapkota, Karissa Y Sanbonmatsu, Dylan Girodat

bioRxiv· June 2025

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Alternate conformational trajectories in ribosome translocation.
Jose L Alejo, Dylan Girodat, Michael J Hammerling, Jessica A Willi, Michael C Jewett

PLoS Comput Biol· August 2024

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Conformational changes of ribosomes during translation elongation resolved by molecular dynamics simulations.
Anuradha Rai Chowdhury, Divya Sapkota, Dylan Girodat

Curr Opin Struct Biol· June 2024

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Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding.
Dylan Girodat, Hans-Joachim Wieden, Scott C Blanchard, Karissa Y Sanbonmatsu

Nat Commun· September 2023

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Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting.
Wataru Nishima, Dylan Girodat, Mikael Holm, Emily J Rundlet, Jose L Alejo

Nucleic Acids Res· August 2022

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Construction of a highly selective and sensitive carbohydrate-detecting biosensor utilizing Computational Identification of Non-disruptive Conjugation sites (CINC) for flexible and streamlined biosensor design.
Dustin D Smith, Dylan Girodat, D Wade Abbott, Hans-Joachim Wieden

Biosens Bioelectron· March 2022

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Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein.
Dylan Girodat, Avik K Pati, Daniel S Terry, Scott C Blanchard, Karissa Y Sanbonmatsu

PLoS Comput Biol· November 2020

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Loss of macpΨ Ribosomal RNA Modification Is a Major Feature of Cancer.
Artem Babaian, Katharina Rothe, Dylan Girodat, Igor Minia, Sara Djondovic

Cell Rep· May 2020

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Elongation Factor Tu Switch I Element is a Gate for Aminoacyl-tRNA Selection.
Dylan Girodat, Scott C Blanchard, Hans-Joachim Wieden, Karissa Y Sanbonmatsu

J Mol Biol· April 2020

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Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection.
Justin C Morse, Dylan Girodat, Benjamin J Burnett, Mikael Holm, Roger B Altman

Proc Natl Acad Sci U S A· February 2020

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Elongation Factor Tu's Nucleotide Binding Is Governed by a Thermodynamic Landscape Unique among Bacterial Translation Factors.
Dylan Girodat, Evan Mercier, Katherine E Gzyl, Hans-Joachim Wieden

J Am Chem Soc· July 2019

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The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion.
Takehito Tanzawa, Koji Kato, Dylan Girodat, Toyoyuki Ose, Yuki Kumakura

Nucleic Acids Res· April 2018

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Streamlined purification of fluorescently labeled Escherichia coli phosphate-binding protein (PhoS) suitable for rapid-kinetics applications.
Dustin D Smith, Dylan Girodat, Hans-Joachim Wieden, L Brent Selinger

Anal Biochem· November 2017

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In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.
Yanjie Chao, Lei Li, Dylan Girodat, Konrad U Förstner, Nelly Said

Mol Cell· January 2017

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A conserved P-loop anchor limits the structural dynamics that mediate nucleotide dissociation in EF-Tu.
Evan Mercier, Dylan Girodat, Hans-Joachim Wieden

Sci Rep· January 2015

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