Publications by authors named "EW Bell"

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Classification models distinguish functional and trafficking effects of KCNQ1 variants to enhance variant interpretation.
Ana C Chang-Gonzalez, Eric W Bell, Carlos G Vanoye, Eduardo Guadarrama, Reshma R Desai

bioRxiv· November 2025

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Molecular basis for Gβγ-SNARE-mediated inhibition of synaptic vesicle fusion.
Anna R Eitel, Benjamin K Mueller, Ali I Kaya, Montana Young, Jackson B Cassada, Eric W Bell

J Biol Chem· August 2025

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FakeRotLib: Expedient Noncanonical Amino Acid Parametrization in Rosetta.
Eric W Bell, Benjamin P Brown, Jens Meiler

J Chem Inf Model· August 2025

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FakeRotLib: expedient non-canonical amino acid parameterization in Rosetta.
Eric W Bell, Benjamin P Brown, Jens Meiler

bioRxiv· May 2025

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I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction.
Xiaogen Zhou, Wei Zheng, Yang Li, Robin Pearce, Chengxin Zhang, Eric W Bell

Nat Protoc· October 2022

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PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning.
Eric W Bell, Jacob H Schwartz, Lydia Freddolino, Yang Zhang

J Mol Biol· June 2022

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Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
Wei Zheng, Yang Li, Chengxin Zhang, Xiaogen Zhou, Robin Pearce, Eric W Bell

Proteins· December 2021

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Protein inter-residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14.
Yang Li, Chengxin Zhang, Wei Zheng, Xiaogen Zhou, Eric W Bell

Proteins· December 2021

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Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations.
Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W Bell

Cell Rep Methods· July 2021

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Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks.
Yang Li, Chengxin Zhang, Eric W Bell, Wei Zheng, Xiaogen Zhou

PLoS Comput Biol· March 2021

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Recombinant Penicillium oxalicum 16 β-Glucosidase 1 Displays Comprehensive Inhibitory Resistance to Several Lignocellulose Pretreatment Products, Ethanol, and Salt.
Hanxin Li, Shi Yi, Eric W Bell, Qiuxia Huang, Xihua Zhao

Appl Biochem Biotechnol· June 2020

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EDock: blind protein-ligand docking by replica-exchange monte carlo simulation.
Wenyi Zhang, Eric W Bell, Minghao Yin, Yang Zhang

J Cheminform· May 2020

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Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1.
Chengxin Zhang, Wei Zheng, Xiaoqiang Huang, Eric W Bell, Xiaogen Zhou

J Proteome Res· April 2020

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Protein structure and sequence re-analysis of 2019-nCoV genome does not indicate snakes as its intermediate host or the unique similarity between its spike protein insertions and HIV-1.
Chengxin Zhang, Wei Zheng, Xiaoqiang Huang, Eric W Bell, Xiaogen Zhou

bioRxiv· February 2020

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Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13.
Yang Li, Chengxin Zhang, Eric W Bell, Dong-Jun Yu, Yang Zhang

Proteins· December 2019

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I-TASSER gateway: A protein structure and function prediction server powered by XSEDE.
Wei Zheng, Chengxin Zhang, Eric W Bell, Yang Zhang

Future Gener Comput Syst· October 2019

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DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism.
Eric W Bell, Yang Zhang

J Cheminform· June 2019

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Identification of inhibitors of the E. coli chaperone SurA using in silico and in vitro techniques.
Eric W Bell, Erica J Zheng, Lisa M Ryno

Bioorg Med Chem Lett· December 2018

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Coaxial-resonator-driven rf (Paul) trap for strong confinement.
SR Jefferts, C Monroe, EW Bell, DJ Wineland

Phys Rev A· April 1995

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Merged-beams energy-loss technique for electron-ion excitation: Absolute total cross sections for O5+(2s-->2p).
EW Bell, XQ Guo, JL Forand, K Rinn, DR Swenson

Phys Rev A· June 1994

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Electron-impact ionization of In+ and Xe+.
EW Bell, N Djuric, GH Dunn

Phys Rev A· December 1993

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Absolute cross sections for electron-impact single ionization of Si+ and Si2+.
N Djuric, EW Bell, XQ Guo, GH Dunn, RA Phaneuf

Phys Rev A· June 1993

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Electron-impact ionization of Si6+ and Si7+ ions.
Zeijlmans van Emmichoven PA, ME Bannister, DC Gregory, CC Havener, RA Phaneuf, EW Bell

Phys Rev A· April 1993

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Evidence for significant backscattering in near-threshold electron-impact excitation of Ar7+(3s-->3p).
XQ Guo, EW Bell, JS Thompson, GH Dunn, ME Bannister

Phys Rev A· January 1993

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Absolute cross-section measurements for electron-impact ionization of Cl+.
N Djuric, EW Bell, E Daniel, GH Dunn

Phys Rev A· July 1992

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