Publications by authors named "Earl A Middlebrook"

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Use to identify commercially available American Type Culture Collection strains based on sequence queries.
Samuel I Koehler, Earl A Middlebrook, Blake T Hovde, Erik R Hanschen

PeerJ· September 2025

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Protocol to detect dilution cycles in chemostat experiments and estimate growth rate slopes with linear modeling with R software chemostat_regression.
Samuel I Koehler, Jennifer T Pentz, Earl A Middlebrook, Blake T Hovde, Erik R Hanschen

STAR Protoc· September 2025

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Draft genome sequences of six isolates collected from humans and livestock in Tanzania.
Earl A Middlebrook, Ephrasia Hugho, Beatus Lyimo, Coletha Mathew, Charles Mayenga

Microbiol Resour Announc· June 2025

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National serosurvey and risk mapping reveal widespread distribution of Coxiella burnetii in Kenya.
Lillian Wambua, Bernard Bett, Hussein M Abkallo, Mathew Muturi, Daniel Nthiwa, Earl A Middlebrook

Sci Rep· March 2025

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The Bacterial and pathogenic landscape of African buffalo (Syncerus caffer) whole blood and serum from Kenya.
Richard Nyamota, Earl A Middlebrook, Hussein M Abkallo, James Akoko, Francis Gakuya

Anim Microbiome· January 2025

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Seroprevalence and risk factors for brucellosis amongst livestock and humans in a multi-herd ranch system in Kagera, Tanzania.
Beatus Lyimo, Ephrasia Hugho, Coletha Mathew, Charles Mayenga, Abdul Hamid Lukambagire, Earl A Middlebrook

Front Public Health· November 2024

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OrthoPhyl-streamlining large-scale, orthology-based phylogenomic studies of bacteria at broad evolutionary scales.
Earl A Middlebrook, Robab Katani, Jeanne M Fair

G3 (Bethesda)· August 2024

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Ongoing Cooperative Engagement Facilitates Agile Pandemic and Outbreak Response: Lessons Learned Through Cooperative Engagement Between Uganda and the United States.
Andrew W Bartlow, Earl A Middlebrook, Armand E K Dichosa, John Kayiwa, Charity A Nassuna

Health Secur· June 2024

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Integration of SARS-CoV-2 testing and genomic sequencing into influenza sentinel surveillance in Uganda, January to December 2022.
John T Kayiwa, Charity Nassuna, Sophia Mulei, Gladys Kiggundu, Joweria Nakaseegu, Earl Austin Middlebrook

Microbiol Spectr· December 2023

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Seroprevalence of Brucella spp. and Rift Valley fever virus among slaughterhouse workers in Isiolo County, northern Kenya.
Richard Nyamota, Josphat Maina, James Akoko, Daniel Nthiwa, Athman Mwatondo, Earl A Middlebrook

PLoS Negl Trop Dis· October 2023

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If You're Not Confused, You're Not Paying Attention: Is Not Brucella.
Edgardo Moreno, Earl A Middlebrook, Pamela Altamirano-Silva, Sascha Al Dahouk, George F Araj

J Clin Microbiol· August 2023

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Identification and distribution of pathogens coinfecting with Brucella spp., Coxiella burnetii and Rift Valley fever virus in humans, livestock and wildlife.
Earl A Middlebrook, Alicia T Romero, Bernard Bett, Daniel Nthiwa, Samuel O Oyola

Zoonoses Public Health· May 2022

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Deep Sequencing of MHC-Adapted Viral Lines Reveals Complex Recombinational Exchanges With Endogenous Retroviruses Leading to High-Frequency Variants.
Earl A Middlebrook, Derek L Stark, Douglas H Cornwall, Jason L Kubinak, Wayne K Potts

Front Genet· August 2021

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How Cooperative Engagement Programs Strengthen Sequencing Capabilities for Biosurveillance and Outbreak Response.
Andrew W Bartlow, Earl A Middlebrook, Alicia T Romero, Jeanne M Fair

Front Public Health· May 2021

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