Publications by authors named "Eby M Sim"

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Emergence of : novel insights into zoonotic reservoirs and genomic epidemiology.
Benedict T Hugh, Eby M Sim, Taryn Crighton, Vitali Sintchenko

Front Public Health· May 2025

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Estimating the deferred value of pathogen genomic data for secondary use.
Vitali Sintchenko, Eby M Sim, Carl J E Suster

Sci Data· May 2025

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Microbiological treatment failure associated with macrolide-resistant .
David Prabhakar, Winkie Fong, Eby M Sim, Annaleise R Howard-Jones, Trang Nguyen

ASM Case Rep· May 2025

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Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.
Eby M Sim, Qinning Wang, Peter Howard, Rady Kim, Ling Lim

PLoS One· August 2023

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The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez, Eby M Sim

Nat Commun· April 2023

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Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.
Lewis C E Mason, David R Greig, Lauren A Cowley, Sally R Partridge, Elena Martinez, Eby M Sim

Nat Commun· April 2023

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Pangenome Analysis of a Salmonella Enteritidis Population Links a Major Outbreak to a Gifsy-1-Like Prophage Containing Anti-Inflammatory Gene .
Adam J Svahn, Carl J E Suster, Sheryl L Chang, Rebecca J Rockett, Eby M Sim

Microbiol Spectr· March 2023

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Genomes of Vibrio cholerae O1 Serotype Ogawa Associated with Current Cholera Activity in Pakistan.
Eby M Sim, Elena Martinez, Grace A Blackwell, David Pham, Gretschen Millan

Microbiol Resour Announc· January 2023

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Case report: a genomics-guided reclassification of a blood culture isolate misassigned by MALDI-TOF as .
Eby M Sim, Bryant Koh, Jimmy Ng, Trang Nguyen, Qinning Wang

Access Microbiol· October 2022

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Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.
Rebecca J Rockett, Jenny Draper, Mailie Gall, Eby M Sim, Alicia Arnott

Nat Commun· May 2022

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Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use.
Rebecca Rockett, Kerri Basile, Susan Maddocks, Winkie Fong, Jessica E Agius, Eby M Sim

N Engl J Med· April 2022

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Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing in New South Wales, Australia.
Eby M Sim, Ryan Kim, Mailie Gall, Alicia Arnott, Peter Howard

Front Microbiol· December 2021

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Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.
Rebecca J Rockett, Alicia Arnott, Connie Lam, Rosemarie Sadsad, Verlaine Timms, Eby M Sim

Nat Med· September 2020

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Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams.
Dann Turner, J Mark Sutton, Darren M Reynolds, Eby M Sim, Nicola K Petty

Methods Mol Biol· June 2018

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Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.
Ricaurte Alejandro Marquez-Ortiz, Leanne Haggerty, Narda Olarte, Carolina Duarte, Ulises Garza-Ramos, Eby M Sim

Genome Biol Evol· June 2017

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First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151.
R Alejandro Marquez-Ortiz, Leanne Haggerty, Eby M Sim, Carolina Duarte, Betsy E Castro-Cardozo

Genome Announc· January 2017

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Phylogenetically related Argentinean and Australian Escherichia coli O157 isolates are distinguished by virulence clades and alternative Shiga toxin 1 and 2 prophages.
Glen E Mellor, Eby M Sim, Robert S Barlow, Beatriz A D'Astek, Lucia Galli

Appl Environ Microbiol· July 2012

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