Publications by authors named "Edmon Begoli"

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DOME: Directional medical embedding vectors from Electronic Health Records.
Jun Wen, Hao Xue, Everett Rush, Vidul A Panickan, Tianrun Cai, Edmon Begoli

J Biomed Inform· February 2025

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ARCH: Large-scale knowledge graph via aggregated narrative codified health records analysis.
Ziming Gan, Doudou Zhou, Everett Rush, Vidul A Panickan, Yuk-Lam Ho, Edmon Begoli

J Biomed Inform· February 2025

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Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program.
Anurag Verma, Jennifer E Huffman, Alex Rodriguez, Mitchell Conery, Molei Liu, Edmon Begoli

Science· July 2024

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Accelerating Genome- and Phenome-Wide Association Studies using GPUs - A case study using data from the Million Veteran Program.
Alex Rodriguez, Youngdae Kim, Tarak Nath Nandi, Karl Keat, Rachit Kumar, Edmon Begoli

bioRxiv· May 2024

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Question-answering system extracts information on injection drug use from clinical notes.
Maria Mahbub, Ian Goethert, Ioana Danciu, Kathryn Knight, Sudarshan Srinivasan, Edmon Begoli

Commun Med (Lond)· April 2024

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Diversity and Scale: Genetic Architecture of 2,068 Traits in the VA Million Veteran Program.
Anurag Verma, Jennifer E Huffman, Alex Rodriguez, Mitchell Conery, Molei Liu, Edmon Begoli

medRxiv· June 2023

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ARCH: Large-scale Knowledge Graph via Aggregated Narrative Codified Health Records Analysis.
Ziming Gan, Doudou Zhou, Everett Rush, Vidul A Panickan, Yuk-Lam Ho, Edmon Begoli

medRxiv· May 2023

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Multimodal representation learning for predicting molecule-disease relations.
Jun Wen, Xiang Zhang, Everett Rush, Vidul A Panickan, Xingyu Li, Edmon Begoli

Bioinformatics· February 2023

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BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task.
Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D Peterson

Bioinformatics· September 2022

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Visualizing novel connections and genetic similarities across diseases using a network-medicine based approach.
Brian Ferolito, Italo Faria do Valle, Hanna Gerlovin, Lauren Costa, Juan P Casas, Edmon Begoli

Sci Rep· September 2022

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sciCAN: single-cell chromatin accessibility and gene expression data integration via cycle-consistent adversarial network.
Yang Xu, Edmon Begoli, Rachel Patton McCord

NPJ Syst Biol Appl· September 2022

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Network-medicine framework for studying disease trajectories in U.S. veterans.
Italo Faria do Valle, Brian Ferolito, Hanna Gerlovin, Lauren Costa, Serkalem Demissie, Edmon Begoli

Sci Rep· July 2022

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Unstructured clinical notes within the 24 hours since admission predict short, mid & long-term mortality in adult ICU patients.
Maria Mahbub, Sudarshan Srinivasan, Ioana Danciu, Alina Peluso, Edmon Begoli

PLoS One· February 2022

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Pharmacoepidemiology, Machine Learning, and COVID-19: An Intent-to-Treat Analysis of Hydroxychloroquine, With or Without Azithromycin, and COVID-19 Outcomes Among Hospitalized US Veterans.
Hanna Gerlovin, Daniel C Posner, Yuk-Lam Ho, Christopher T Rentsch, Janet P Tate, Edmon Begoli

Am J Epidemiol· November 2021

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Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data.
Chuan Hong, Everett Rush, Molei Liu, Doudou Zhou, Jiehuan Sun, Edmon Begoli

NPJ Digit Med· October 2021

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Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization.
Dongfang Xu, Manoj Gopale, Jiacheng Zhang, Kris Brown, Edmon Begoli

J Am Med Inform Assoc· October 2020

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Standardized Architecture for a Mega-Biobank Phenomic Library: The Million Veteran Program (MVP).
Kathryn E Knight, Jacqueline Honerlaw, Ioana Danciu, Franciel Linares, Yuk-Lam Ho, Edmon Begoli

AMIA Jt Summits Transl Sci Proc· May 2020

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JSONize: A Scalable Machine Learning Pipeline to Model Medical Notes as Semi-structured Documents.
Everett N Rush, Ioana Danciu, George Ostrouchov, Kelly Cho, Benjamin W Mayer, Edmon Begoli

AMIA Jt Summits Transl Sci Proc· May 2020

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A minimal set of physiomarkers in continuous high frequency data streams predict adult sepsis onset earlier.
Franco van Wyk, Anahita Khojandi, Akram Mohammed, Edmon Begoli, Robert L Davis

Int J Med Inform· February 2019

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Understanding the pros and cons of big data analytics.
Kent Bottles, Edmon Begoli

Physician Exec· October 2014

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