Publications by authors named "Eduan Wilkinson"

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Enhancing SARS-CoV-2 response capacity in Africa and other centers for research in emerging infectious diseases centres through a collaborative training programme.
Ambroise Ahouidi, Abdou Padane, Alioune Gaye, Anavaj Sakuntabha, Awa Deme, Eduan Wilkinson

Clin Microbiol Infect· January 2026

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Genomic analysis and antimicrobial resistance of isolated during Zambia's 2023 cholera epidemic.
Harriet Ng'ombe, Charlie C Luchen, Lia Bote, Mpanga Kasonde, Kunda Musonda, Eduan Wilkinson

Microb Genom· December 2025

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CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation.
Massimiliano S Tagliamonte, Abhinav Sharma, Alberto Riva, Monika Moir, Marco Salemi, Eduan Wilkinson

Bioinformatics· December 2025

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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage.
Dikeledi Kekana, Buhle Ntozini, Ryan Hisner, Mukhlid Yousif, Phindile Ntuli, Eduan Wilkinson

Virus Evol· November 2025

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Identifying genomic surveillance gaps in Africa for the global public health response to West Nile virus: a systematic review.
Monika Moir, Nikita Sitharam, Laura Marije Hofstra, Graeme Dor, Gaspary Mwanyika, Eduan Wilkinson

Lancet Microbe· October 2025

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A decade of dengue disease burden in Africa (2013-2023): a systematic review.
Gaspary O Mwanyika, Monika Moir, Abdualmoniem O Musa, Jenicca Poongavanan, Graeme Dor, Eduan Wilkinson

Travel Med Infect Dis· October 2025

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Neutralizing and binding antibodies are a correlate of risk of COVID-19 in the CoVPN 3008 study in people with HIV.
Nonhlanhla N Mkhize, Bo Zhang, Caroline Brackett, Peter James Elyanu, Asa Tapley, Eduan Wilkinson

Nat Commun· October 2025

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Conserved recombination patterns across hepatitis B genotypes: a retrospective study.
Derek Tshiabuila, James E San, Eduan Wilkinson, Graeme Dor, Houriiyah Tegally

Virol J· July 2025

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Genomic Surveillance of Climate-Amplified Cholera Outbreak, Malawi, 2022-2023.
Lucious Chabuka, Wonderful T Choga, Carla N Mavian, Monika Moir, Christian Morgenstern, Eduan Wilkinson

Emerg Infect Dis· June 2025

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Tracing the spatial origins and spread of SARS-CoV-2 Omicron lineages in South Africa.
Graeme Dor, Eduan Wilkinson, Darren P Martin, Monika Moir, Derek Tshiabuila

Nat Commun· May 2025

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Unveiling novel features and phylogenomic assessment of indigenous AB-S79 using comparative genomics.
Adetomiwa Ayodele Adeniji, Chinenyenwa Fortune Chukwuneme, Emilyn Costa Conceição, Ayansina Segun Ayangbenro, Eduan Wilkinson

Microbiol Spectr· April 2025

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Genomic Characterization of Circulating Dengue Virus, Ethiopia, 2022-2023.
Adugna Abera, Houriiyah Tegally, Geremew Tasew, Eduan Wilkinson, Abraham Ali

Emerg Infect Dis· March 2025

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Hybrid versus vaccine immunity of mRNA-1273 among people living with HIV in East and Southern Africa: a prospective cohort analysis from the multicentre CoVPN 3008 (Ubuntu) study.
Nigel Garrett, Asa Tapley, Aaron Hudson, Sufia Dadabhai, Bo Zhang, Eduan Wilkinson

EClinicalMedicine· February 2025

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Reflective Evaluation of Next-Generation Sequencing Data during Early Phase Detection of the Delta Variant.
Upasana Ramphal, Derek Tshiabuila, Yajna Ramphal, Jennifer Giandhari, Carel van Heerden, Eduan Wilkinson

OBM Genet· January 2025

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Integrated analyses of the transmission history of SARS-CoV-2 and its association with molecular evolution of the virus underlining the pandemic outbreaks in Italy, 2019-2023.
Eleonora Cella, Vagner Fonseca, Francesco Branda, Stephane Tosta, Keldenn Moreno, Eduan Wilkinson

Int J Infect Dis· December 2024

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"The COVID-19 pandemic in BRICS: Milestones, interventions, and molecular epidemiology".
Stephanie van Wyk, Monika Moir, Anindita Banerjee, Georgii A Bazykin, Nidhan K Biswas, Eduan Wilkinson

PLOS Glob Public Health· December 2024

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A phylogenetic assessment of HIV-1 transmission trends among people who inject drugs from Coastal and Nairobi, Kenya.
Hanley Kingston, George Nduva, Bhavna H Chohan, Loice Mbogo, Aliza Monroe-Wise, Eduan Wilkinson

Virus Evol· November 2024

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Emergence of Omicron FN.1 a descendent of BQ.1.1 in Botswana.
Wonderful T Choga, Emanuele Gustani-Buss, Houriiyah Tegally, Dorcas Maruapula, Xiaoyu Yu, Eduan Wilkinson

Virus Evol· November 2024

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Dynamics and ecology of a multi-stage expansion of Oropouche virus in Brazil.
Houriiyah Tegally, Simon Dellicour, Jenicca Poongavanan, Carla Mavian, Graeme Dor, Eduan Wilkinson

medRxiv· October 2024

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Characterization of HIV variants from paired Cerebrospinal fluid and Plasma samples in primary microglia and CD4 T-cells.
Stephanie B H Gumbs, Arjen J Stam, Tania Mudrikova, Pauline J Schipper, Andy I M Hoepelman, Eduan Wilkinson

J Neurovirol· August 2024

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Genomic characterization of Dengue virus circulation in Ethiopia.
Adugna Abera, Houriiyah Tegally, Geremew Tasew, Eduan Wilkinson, Abraham Ali

medRxiv· July 2024

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Understanding the Transmission Dynamics of the Chikungunya Virus in Africa.
Yajna Ramphal, Houriiyah Tegally, James Emmanuel San, Martina Larissa Reichmuth, Marije Hofstra, Eduan Wilkinson

Pathogens· July 2024

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HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ /lamivudine /dolutegravir (TLD) roll-out in Mozambique.
Nália Ismael, Hernane Gemusse, Isabel Mahumane, Osvaldo Laurindo, Cacildo Magul, Eduan Wilkinson

BMC Infect Dis· July 2024

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An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings.
Derek Tshiabuila, Wonderful Choga, San E James, Tongai Maponga, Wolfgang Preiser, Eduan Wilkinson

medRxiv· January 2024

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Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium.
Jenicca Poongavanan, Joicymara Xavier, Marcel Dunaiski, Houriiyah Tegally, Sunday Oladejo, Eduan Wilkinson

S Afr J Sci· May 2023

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