Publications by authors named "Elliott Swanson"

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Multi-omic profiling reveals age-related immune dynamics in healthy adults.
Qiuyu Gong, Mehul Sharma, Marla C Glass, Emma L Kuan, Aishwarya Chander, Elliott Swanson

Nature· December 2025

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Mapping single-cell diploid chromatin fiber architectures using DAF-seq.
Elliott G Swanson, Yizi Mao, Benjamin J Mallory, Mitchell R Vollger, Stephanie C Bohaczuk

Nat Biotechnol· December 2025

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A telomere-to-telomere map of somatic mutation burden and functional impact in cancer.
Min-Hwan Sohn, Danilo Dubocanin, Mitchell R Vollger, Youngjun Kwon, Anna Minkina, Elliott G Swanson

bioRxiv· October 2025

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Progression to rheumatoid arthritis in at-risk individuals is defined by systemic inflammation and by T and B cell dysregulation.
Ziyuan He, Marla C Glass, Pravina Venkatesan, Marie L Feser, Leander Lazaro, Elliott G Swanson

Sci Transl Med· September 2025

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A haplotype-resolved view of human gene regulation.
Mitchell R Vollger, Elliott G Swanson, Shane J Neph, Jane Ranchalis, Katherine M Munson

bioRxiv· June 2025

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Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition.
Mitchell R Vollger, Jonas Korlach, Kiara C Eldred, Elliott Swanson, Jason G Underwood

Nat Genet· February 2025

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Resolving the chromatin impact of mosaic variants with targeted Fiber-seq.
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson

Genome Res· December 2024

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DNA-m6A calling and integrated long-read epigenetic and genetic analysis with .
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Elliott Swanson

Genome Res· November 2024

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Systemic inflammation and lymphocyte activation precede rheumatoid arthritis.
Ziyuan He, Marla C Glass, Pravina Venkatesan, Marie L Feser, Leander Lazaro, Elliott G Swanson

bioRxiv· November 2024

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Longitudinal Multi-omic Immune Profiling Reveals Age-Related Immune Cell Dynamics in Healthy Adults.
Qiuyu Gong, Mehul Sharma, Emma L Kuan, Marla C Glass, Aishwarya Chander, Elliott Swanson

bioRxiv· September 2024

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Resolving the chromatin impact of mosaic variants with targeted Fiber-seq.
Stephanie C Bohaczuk, Zachary J Amador, Chang Li, Benjamin J Mallory, Elliott G Swanson

bioRxiv· July 2024

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STR mutations on chromosome 15q cause thyrotropin resistance by activating a primate-specific enhancer of MIR7-2/MIR1179.
Helmut Grasberger, Alexandra M Dumitrescu, Xiao-Hui Liao, Elliott G Swanson, Roy E Weiss

Nat Genet· May 2024

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Author Correction: Trimodal single-cell profiling reveals a novel pediatric CD8αα T cell subset and broad age-related molecular reprogramming across the T cell compartment.
Zachary Thomson, Ziyuan He, Elliott Swanson, Katherine Henderson, Cole Phalen

Nat Immunol· March 2024

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DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.
Anupama Jha, Stephanie C Bohaczuk, Yizi Mao, Jane Ranchalis, Benjamin J Mallory, Elliott Swanson

bioRxiv· December 2023

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Trimodal single-cell profiling reveals a novel pediatric CD8αα T cell subset and broad age-related molecular reprogramming across the T cell compartment.
Zachary Thomson, Ziyuan He, Elliott Swanson, Katherine Henderson, Cole Phalen

Nat Immunol· November 2023

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Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition.
Mitchell R Vollger, Jonas Korlach, Kiara C Eldred, Elliott Swanson, Jason G Underwood

bioRxiv· September 2023

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A comprehensive platform for analyzing longitudinal multi-omics data.
Suhas V Vasaikar, Adam K Savage, Qiuyu Gong, Elliott Swanson, Aarthi Talla

Nat Commun· March 2023

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BarWare: efficient software tools for barcoded single-cell genomics.
Elliott Swanson, Julian Reading, Lucas T Graybuck, Peter J Skene

BMC Bioinformatics· March 2022

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Optimized workflow for human PBMC multiomic immunosurveillance studies.
Palak C Genge, Charles R Roll, Alexander T Heubeck, Elliott Swanson, Nina Kondza

STAR Protoc· December 2021

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Multimodal analysis for human studies shows extensive molecular changes from delays in blood processing.
Adam K Savage, Miriam V Gutschow, Tony Chiang, Kathy Henderson, Richard Green, Elliott Swanson

iScience· May 2021

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Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq.
Elliott Swanson, Cara Lord, Julian Reading, Alexander T Heubeck, Palak C Genge

Elife· April 2021

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