Publications by authors named "Emily Boja"

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Making human derived data FAIR: feedback from NCI office of data sharing workshop.
Mousumi Ghosh, Ying Huang, Heather K Basehore, Nathaniel H Boyd, Joseph A Flores-Toro, Emily S Boja

J Natl Cancer Inst· December 2025

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Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer.
Hui Zhang, Tao Liu, Zhen Zhang, Samuel H Payne, Bai Zhang, Emily S Boja

Cell· November 2025

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Childhood Cancer Data Initiative: Expanded access to tumor molecular profiling for children, adolescents, and young adults.
Joseph Flores-Toro, Subhashini Jagu, Malcolm Smith, John Shern, Douglas S Hawkins, Emily Boja

J Natl Cancer Inst· August 2025

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Shooting the moon: the National Cancer Institute's implementation framework for data sharing policies.
Emily S Boja, Jaime M Guidry Auvil

Nat Med· August 2024

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Mapping the KRAS proteoform landscape in colorectal cancer identifies truncated KRAS4B that decreases MAPK signaling.
Lauren M Adams, Caroline J DeHart, Bryon S Drown, Lissa C Anderson, William Bocik, Emily S Boja

J Biol Chem· January 2023

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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions.
Nathan D Olson, Justin Wagner, Jennifer McDaniel, Sarah H Stephens, Samuel T Westreich, Emily Boja

Cell Genom· May 2022

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Targeted Mass Spectrometry Enables Multiplexed Quantification of Immunomodulatory Proteins in Clinical Biospecimens.
Jeffrey R Whiteaker, Rachel A Lundeen, Lei Zhao, Regine M Schoenherr, Aura Burian, Emily Boja

Front Immunol· February 2022

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Proteogenomic characterization of pancreatic ductal adenocarcinoma.
Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, T Mamie Lih, Emily S Boja

Cell· September 2021

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Targeted mass spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP Kinase, and AKT signaling.
Jeffrey R Whiteaker, Kanika Sharma, Melissa A Hoffman, Eric Kuhn, Lei Zhao, Emily Boja

Cell Rep Methods· July 2021

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A community effort to identify and correct mislabeled samples in proteogenomic studies.
Seungyeul Yoo, Zhiao Shi, Bo Wen, SoonJye Kho, Renke Pan, Emily Boja

Patterns (N Y)· May 2021

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Proteogenomic and metabolomic characterization of human glioblastoma.
Liang-Bo Wang, Alla Karpova, Marina A Gritsenko, Jennifer E Kyle, Song Cao, Emily S Boja

Cancer Cell· April 2021

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Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma.
Chen Huang, Lijun Chen, Sara R Savage, Rodrigo Vargas Eguez, Yongchao Dou, Emily S Boja

Cancer Cell· March 2021

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Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer.
Francesca Petralia, Nicole Tignor, Boris Reva, Mateusz Koptyra, Shrabanti Chowdhury, Emily Boja

Cell· December 2020

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Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.
Karsten Krug, Eric J Jaehnig, Shankha Satpathy, Lili Blumenberg, Alla Karpova, Emily S Boja

Cell· November 2020

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Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma.
Yingwei Hu, Jianbo Pan, Punit Shah, Minghui Ao, Stefani N Thomas, Emily S Boja

Cell Rep· October 2020

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Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics.
Mi Yang, Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Emily Boja

Cell Syst· August 2020

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Correction: Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.
Jason E McDermott, Osama A Arshad, Vladislav A Petyuk, Yi Fu, Marina A Gritsenko, Emily S Boja

Cell Rep Med· August 2020

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Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma.
Michael A Gillette, Shankha Satpathy, Song Cao, Saravana M Dhanasekaran, Suhas V Vasaikar, Emily S Boja

Cell· July 2020

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Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability.
Jason E McDermott, Osama A Arshad, Vladislav A Petyuk, Yi Fu, Marina A Gritsenko, Emily S Boja

Cell Rep Med· April 2020

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Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry.
Kyung-Cho Cho, David J Clark, Michael Schnaubelt, Guo Ci Teo, Felipe da Veiga Leprevost, Emily S Boja

Anal Chem· March 2020

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Proteogenomic Characterization of Endometrial Carcinoma.
Yongchao Dou, Emily A Kawaler, Daniel Cui Zhou, Marina A Gritsenko, Chen Huang, Emily Boja

Cell· February 2020

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Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.
David J Clark, Saravana M Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Emily S Boja

Cell· January 2020

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Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.
Qiang Gao, Hongwen Zhu, Liangqing Dong, Weiwei Shi, Ran Chen, Emily Boja

Cell· November 2019

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Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.
Qiang Gao, Hongwen Zhu, Liangqing Dong, Weiwei Shi, Ran Chen, Emily Boja

Cell· October 2019

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Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.
David J Clark, Saravana M Dhanasekaran, Francesca Petralia, Jianbo Pan, Xiaoyu Song, Emily S Boja

Cell· October 2019

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