Publications by authors named "Emmanuel Fernandez"

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Improvement of Nanopore sequencing provides access to high quality genomic data for multi-component CRESS-DNA plant viruses.
Daniel H Otron, Denis Filloux, Andy Brousse, Murielle Hoareau, Babbitha Fenelon, Emmanuel Fernandez

Virol J· March 2025

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Characterization of Six Ampeloviruses Infecting Pineapple in Reunion Island Using a Combination of High-Throughput Sequencing Approaches.
Delphine Massé, Thierry Candresse, Denis Filloux, Sébastien Massart, Nathalie Cassam, Emmanuel Fernandez

Viruses· July 2024

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Virome release of an invasive exotic plant species in southern France.
Oumaima Moubset, Denis Filloux, Hugo Fontes, Charlotte Julian, Emmanuel Fernandez

Virus Evol· March 2024

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Genetic Diversity, Evolution, and Diagnosis of Sugarcane Yellow Leaf Virus from 19 Sugarcane-Producing Locations Worldwide.
Philippe Rott, Sam Grinstead, Sylvie Dallot, Zachary S L Foster, Jean H Daugrois, Emmanuel Fernandez

Plant Dis· November 2023

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The genome of a bunyavirus cannot be defined at the level of the viral particle but only at the scale of the viral population.
Michel Yvon, Thomas L German, Diane E Ullman, Ranjit Dasgupta, Maxwell H Parker, Emmanuel Fernandez

Proc Natl Acad Sci U S A· November 2023

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Virion-Associated Nucleic Acid-Based Metagenomics: A Decade of Advances in Molecular Characterization of Plant Viruses.
Oumaima Moubset, Sarah François, François Maclot, Essowè Palanga, Charlotte Julian, Emmanuel Fernandez

Phytopathology· November 2022

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Identification of a novel vitivirus from pineapple in Reunion Island.
Delphine Massé, Denis Filloux, Thierry Candresse, Sébastien Massart, Armelle Marais, Emmanuel Fernandez

Arch Virol· November 2022

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Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus.
Yuxin Ma, Laurence Svanella-Dumas, Charlotte Julian, Serge Galzi, Emmanuel Fernandez

Arch Virol· September 2021

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Comparison of the Virome of Quarantined Sugarcane Varieties and the Virome of Grasses Growing near the Quarantine Station.
Jean H Daugrois, Denis Filloux, Charlotte Julian, Lisa Claude, Romain Ferdinand, Emmanuel Fernandez

Viruses· May 2021

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Nanopore Sequencing Is a Credible Alternative to Recover Complete Genomes of Geminiviruses.
Selim Ben Chehida, Denis Filloux, Emmanuel Fernandez, Oumaima Moubset, Murielle Hoareau

Microorganisms· April 2021

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Characterisation of the Viral Community Associated with the Alfalfa Weevil () and Its Host Plant, Alfalfa ().
Sarah François, Aymeric Antoine-Lorquin, Maximilien Kulikowski, Marie Frayssinet, Denis Filloux, Emmanuel Fernandez

Viruses· April 2021

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Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces.
Pascal Alonso, Pierre Gladieux, Oumaima Moubset, Pei-Jung Shih, Pierre Mournet, Emmanuel Fernandez

Viruses· October 2019

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High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago.
Sarah Scussel, Thierry Candresse, Armelle Marais, Sohini Claverie, Murielle Hoareau, Emmanuel Fernandez

Arch Virol· August 2019

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A New Prevalent Densovirus Discovered in . Insight from Metagenomics in Viral Communities Associated with Two-Spotted Mite () Populations.
Sarah François, Doriane Mutuel, Alison B Duncan, Leonor R Rodrigues, Celya Danzelle, Emmanuel Fernandez

Viruses· March 2019

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Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral Communities.
Sarah François, Denis Filloux, Emmanuel Fernandez, Mylène Ogliastro, Philippe Roumagnac

Methods Mol Biol· February 2019

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Nanopore-based detection and characterization of yam viruses.
Denis Filloux, Emmanuel Fernandez, Etienne Loire, Lisa Claude, Serge Galzi

Sci Rep· December 2018

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Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale.
Pauline Bernardo, Tristan Charles-Dominique, Mohamed Barakat, Philippe Ortet, Emmanuel Fernandez

ISME J· January 2018

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Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion.
Wardatou Boukari, Ricardo I Alcalá-Briseño, Simona Kraberger, Emmanuel Fernandez, Denis Filloux

Virol J· July 2017

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Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso.
Essowè Palanga, Denis Filloux, Darren P Martin, Emmanuel Fernandez, Daniel Gargani

PLoS One· June 2017

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Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa.
Pauline Bernardo, Brejnev Muhire, Sarah François, Maëlle Deshoux, Penelope Hartnady, Emmanuel Fernandez

Virology· June 2016

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Prevalence of Sugarcane yellow leaf virus in Sugarcane-Producing Regions in Kenya Revealed by Reverse-Transcription Loop-Mediated Isothermal Amplification Method.
Ruth L Amata, Emmanuel Fernandez, Denis Filloux, Darren P Martin, Philippe Rott

Plant Dis· February 2016

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Alfalfa Leaf Curl Virus: an Aphid-Transmitted Geminivirus.
Philippe Roumagnac, Martine Granier, Pauline Bernardo, Maëlle Deshoux, Romain Ferdinand, Emmanuel Fernandez

J Virol· September 2015

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Appearances can be deceptive: revealing a hidden viral infection with deep sequencing in a plant quarantine context.
Thierry Candresse, Denis Filloux, Brejnev Muhire, Charlotte Julian, Serge Galzi, Emmanuel Fernandez

PLoS One· April 2015

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Identification and characterisation of a highly divergent geminivirus: evolutionary and taxonomic implications.
Pauline Bernardo, Michael Golden, Mohammad Akram, Naimuddin, Nagaswamy Nadarajan, Emmanuel Fernandez

Virus Res· October 2013

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