Publications by authors named "Eric A Stone"

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Path2Omics Enhances Transcriptomic and Methylation Prediction Accuracy from Tumor Histopathology.
Danh-Tai Hoang, Eldad D Shulman, Saugato Rahman Dhruba, Nishanth Ulhas Nair, Ranjan Kumar Barman, Eric A Stone

Cancer Res· December 2025

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Genome Biology of Rust Fungi.
Eva C Henningsen, Camilla Langlands-Perry, Eric A Stone, Peter N Dodds, Melania Figueroa

Annu Rev Phytopathol· September 2025

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Protein evolution as a complex system.
Barnabas Gall, Sacha B Pulsford, Dana S Matthews, Matthew A Spence, Joe A Kaczmarski, Eric A Stone

Nat Chem Biol· September 2025

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Path2Omics: Enhanced transcriptomic and methylation prediction accuracy from tumor histopathology.
Danh-Tai Hoang, Eldad D Shulman, Saugato Rahman Dhruba, Nishanth Ulhas Nair, Ranjan K Barman, Eric A Stone

bioRxiv· March 2025

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A deep-learning framework to predict cancer treatment response from histopathology images through imputed transcriptomics.
Danh-Tai Hoang, Gal Dinstag, Eldad D Shulman, Leandro C Hermida, Doreen S Ben-Zvi, Eric A Stone

Nat Cancer· September 2024

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Prediction of DNA methylation-based tumor types from histopathology in central nervous system tumors with deep learning.
Danh-Tai Hoang, Eldad D Shulman, Rust Turakulov, Zied Abdullaev, Omkar Singh, Eric A Stone

Nat Med· July 2024

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Prediction of cancer treatment response from histopathology images through imputed transcriptomics.
Danh-Tai Hoang, Gal Dinstag, Leandro C Hermida, Doreen S Ben-Zvi, Efrat Elis, Eric A Stone

Res Sq· September 2023

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Inferring Species Compositions of Complex Fungal Communities from Long- and Short-Read Sequence Data.
Yiheng Hu, Laszlo Irinyi, Minh Thuy Vi Hoang, Tavish Eenjes, Abigail Graetz, Eric A Stone

mBio· April 2022

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Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data.
Hongyu Duan, Ashley W Jones, Tim Hewitt, Amy Mackenzie, Yiheng Hu, Eric A Stone

Genome Biol· March 2022

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The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation.
Jana Sperschneider, Ashley W Jones, Jamila Nasim, Bo Xu, Silke Jacques, Eric A Stone

BMC Biol· September 2021

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Case-comparison study protocol for gauging effects of neighbourhood trends and sickness: examining the perceptions of transit-Induced gentrification in Prince George's County.
Jennifer D Roberts, Shadi O Tehrani, Roger Isom, Eric A Stone, Micah L Brachman

BMJ Open· October 2020

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The Prevalence and Impact of Model Violations in Phylogenetic Analysis.
Suha Naser-Khdour, Bui Quang Minh, Wenqi Zhang, Eric A Stone, Robert Lanfear

Genome Biol Evol· December 2019

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Functional rare and low frequency variants in BLK and BANK1 contribute to human lupus.
Simon H Jiang, Vicki Athanasopoulos, Julia I Ellyard, Aaron Chuah, Jean Cappello, Eric A Stone

Nat Commun· May 2019

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Accuracy of Genomic Prediction for Foliar Terpene Traits in .
David Kainer, Eric A Stone, Amanda Padovan, William J Foley, Carsten Külheim

G3 (Bethesda)· July 2018

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Recent progress and open questions in Drosophila dosage compensation.
Steven P Vensko, Eric A Stone

Fly (Austin)· June 2016

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Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites.
Daniel A Skelly, Paul M Magwene, Eric A Stone

Genetics· February 2016

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Bias-Variance Tradeoffs in Recombination Rate Estimation.
Eric A Stone, Nadia D Singh

Genetics· February 2016

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Genetic basis of transcriptome diversity in Drosophila melanogaster.
Wen Huang, Mary Anna Carbone, Michael M Magwire, Jason A Peiffer, Richard F Lyman, Eric A Stone

Proc Natl Acad Sci U S A· November 2015

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The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen.
Pooja K Strope, Daniel A Skelly, Stanislav G Kozmin, Gayathri Mahadevan, Eric A Stone

Genome Res· May 2015

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No evidence for a global male-specific lethal complex-mediated dosage compensation contribution to the demasculinization of the Drosophila melanogaster X chromosome.
Steven P Vensko, Eric A Stone

PLoS One· April 2015

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Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus.
Rodrigo A Olarte, Carolyn J Worthington, Bruce W Horn, Geromy G Moore, Rakhi Singh, Eric A Stone

Mol Ecol· April 2015

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X-to-autosome expression and msl-2 transcript abundance correlate among Drosophila melanogaster somatic tissues.
Steven P Vensko Ii, Eric A Stone

PeerJ· March 2015

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Structural properties of the minimum cut of partially-supplied graphs.
Alexander R Griffing, Benjamin R Lynch, Eric A Stone

Discrete Appl Math· November 2014

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Predictor performance with stratified data and imbalanced classes.
Eric A Stone

Nat Methods· August 2014

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Genome-wide analysis in Drosophila reveals age-specific effects of SNPs on fitness traits.
Mary F Durham, Michael M Magwire, Eric A Stone, Jeff Leips

Nat Commun· July 2014

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