Publications by authors named "Eric J Martin"

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Compound Activity Prediction with Dose-Dependent Transcriptomic Profiles and Deep Learning.
William J Godinez, Vladimir Trifonov, Bin Fang, Guray Kuzu, Luying Pei, Eric J Martin

J Chem Inf Model· April 2024

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Enhancing the Small-Scale Screenable Biological Space beyond Known Chemogenomics Libraries with Gray Chemical Matter─Compounds with Novel Mechanisms from High-Throughput Screening Profiles.
Jason R Thomas, Claude Shelton, Jason Murphy, Scott Brittain, Mark-Anthony Bray, Martin Henault, Eric J Martin

ACS Chem Biol· April 2024

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Traumatic injury causes selective degeneration and TDP-43 mislocalization in human iPSC-derived -associated ALS/FTD motor neurons.
Eric J Martin, Citlally Santacruz, Angela Mitevska, Ian E Jones, Gopinath Krishnan

bioRxiv· March 2024

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Polyurethane Culture Substrates Enable Long-Term Neuron Monoculture in a Human Model of Neurotrauma.
Angela Mitevska, Citlally Santacruz, Eric J Martin, Ian E Jones, Arian Ghiacy

Neurotrauma Rep· October 2023

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On the Choice of Active Site Sequences for Kinase-Ligand Affinity Prediction.
Jannis Born, Yoel Shoshan, Tien Huynh, Wendy D Cornell, Eric J Martin

J Chem Inf Model· September 2022

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Removal of trichloroethene from thin clay lenses by electrical resistance heating: Laboratory experiments and the effects of gas saturation.
Kevin G Mumford, Eric J Martin, Bernard H Kueper

J Contam Hydrol· December 2021

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Collaborative Profile-QSAR: A Natural Platform for Building Collaborative Models among Competing Companies.
Eric J Martin, Xiang-Wei Zhu

J Chem Inf Model· April 2021

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MAIP: a web service for predicting blood-stage malaria inhibitors.
Nicolas Bosc, Eloy Felix, Ricardo Arcila, David Mendez, Martin R Saunders, Eric J Martin

J Cheminform· February 2021

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Biased Diversity for Effective Virtual Screening.
Eric J Martin, Johanna M Jansen

J Chem Inf Model· September 2020

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TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers.
Jocelyn Charlton, Eunmi J Jung, Alexandra L Mattei, Nina Bailly, Jing Liao, Eric J Martin

Nat Genet· August 2020

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All-Assay-Max2 pQSAR: Activity Predictions as Accurate as Four-Concentration ICs for 8558 Novartis Assays.
Eric J Martin, Valery R Polyakov, Xiang-Wei Zhu, Li Tian, Prasenjit Mukherjee

J Chem Inf Model· October 2019

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Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology.
Michael J Ziller, Juan A Ortega, Katharina A Quinlan, David P Santos, Hongcang Gu, Eric J Martin

Cell Stem Cell· April 2018

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Physiologically Based Pharmacokinetic Modeling in Lead Optimization. 2. Rational Bioavailability Design by Global Sensitivity Analysis To Identify Properties Affecting Bioavailability.
Pankaj R Daga, Michael B Bolger, Ian S Haworth, Robert D Clark, Eric J Martin

Mol Pharm· March 2018

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Physiologically Based Pharmacokinetic Modeling in Lead Optimization. 1. Evaluation and Adaptation of GastroPlus To Predict Bioavailability of Medchem Series.
Pankaj R Daga, Michael B Bolger, Ian S Haworth, Robert D Clark, Eric J Martin

Mol Pharm· March 2018

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Profile-QSAR 2.0: Kinase Virtual Screening Accuracy Comparable to Four-Concentration ICs for Realistically Novel Compounds.
Eric J Martin, Valery R Polyakov, Li Tian, Rolando C Perez

J Chem Inf Model· August 2017

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Blockade of orexin receptors attenuates the cardiovascular response to air-jet stress in spontaneously hypertensive rats.
Eric J Martin, Morgan E Hernandez, Linda F Hayward

Auton Neurosci· December 2016

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Chronic heart failure alters orexin and melanin concentrating hormone but not corticotrophin releasing hormone-related gene expression in the brain of male Lewis rats.
Linda F Hayward, Erin E Hampton, Leonardo F Ferreira, Demetra D Christou, Jeung-Ki Yoo, Eric J Martin

Neuropeptides· August 2015

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Surrogate AutoShim: predocking into a universal ensemble kinase receptor for three dimensional activity prediction, very quickly, without a crystal structure.
Eric J Martin, David C Sullivan

J Chem Inf Model· April 2008

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AutoShim: empirically corrected scoring functions for quantitative docking with a crystal structure and IC50 training data.
Eric J Martin, David C Sullivan

J Chem Inf Model· April 2008

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Exploiting structure-activity relationships in docking.
David C Sullivan, Eric J Martin

J Chem Inf Model· April 2008

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Target-biased scoring approaches and expert systems in structure-based virtual screening.
Johanna M Jansen, Eric J Martin

Curr Opin Chem Biol· August 2004

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On the representation of combinatorial libraries.
Derek Maclean, Eric J Martin

J Comb Chem· June 2004

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