Publications by authors named "Eric M Knight"

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Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states.
Byung-Kwan Cho, Donghyuk Kim, Eric M Knight, Karsten Zengler, Bernhard O Palsson

BMC Biol· January 2014

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Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis.
Juan Nogales, Steinn Gudmundsson, Eric M Knight, Bernhard O Palsson, Ines Thiele

Proc Natl Acad Sci U S A· February 2012

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RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media.
Tom M Conrad, Michael Frazier, Andrew R Joyce, Byung-Kwan Cho, Eric M Knight

Proc Natl Acad Sci U S A· November 2010

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Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene.
Pep Charusanti, Tom M Conrad, Eric M Knight, Karthik Venkataraman, Nicole L Fong

PLoS Genet· November 2010

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The transcription unit architecture of the Escherichia coli genome.
Byung-Kwan Cho, Karsten Zengler, Yu Qiu, Young Seoub Park, Eric M Knight

Nat Biotechnol· November 2009

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Gene expression profiling and the use of genome-scale in silico models of Escherichia coli for analysis: providing context for content.
Nathan E Lewis, Byung-Kwan Cho, Eric M Knight, Bernhard O Palsson

J Bacteriol· June 2009

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Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli.
Byung-Kwan Cho, Christian L Barrett, Eric M Knight, Young Seoub Park, Bernhard Ø Palsson

Proc Natl Acad Sci U S A· December 2008

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Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts.
Byung-Kwan Cho, Eric M Knight, Christian L Barrett, Bernhard Ø Palsson

Genome Res· June 2008

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Genomewide identification of protein binding locations using chromatin immunoprecipitation coupled with microarray.
Byung-Kwan Cho, Eric M Knight, Bernhard Ø Palsson

Methods Mol Biol· June 2008

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Systems approach to refining genome annotation.
Jennifer L Reed, Trina R Patel, Keri H Chen, Andrew R Joyce, Margaret K Applebee, Eric M Knight

Proc Natl Acad Sci U S A· November 2006

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Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA.
Byung-Kwan Cho, Eric M Knight, Bernhard Ø Palsson

Microbiology (Reading)· August 2006

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PCR-based tandem epitope tagging system for Escherichia coli genome engineering.
Byung-Kwan Cho, Eric M Knight, Bernhard O Palsson

Biotechniques· January 2006

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In silico design and adaptive evolution of Escherichia coli for production of lactic acid.
Stephen S Fong, Anthony P Burgard, Christopher D Herring, Eric M Knight, Frederick R Blattner

Biotechnol Bioeng· September 2005

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Integrating high-throughput and computational data elucidates bacterial networks.
Markus W Covert, Eric M Knight, Jennifer L Reed, Markus J Herrgard, Bernhard O Palsson

Nature· May 2004

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