Publications by authors named "Eric Pamer"

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Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance.
Cody G Cole, Zhenrun J Zhang, Shravan R Dommaraju, Qiwen Dong, Rosemary L Pope, Eric G Pamer

Cell Host Microbe· December 2025

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IDBac: an open-access web platform and compendium for the identification of bacteria by MALDI-TOF mass spectrometry.
Nyssa K Krull, Michael Strobel, Julia Saulog, Liana Zaroubi, Bruno S Paulo, Eric G Pamer

bioRxiv· October 2025

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Dietary Fiber Lacks a Consistent Effect on Immune Checkpoint Blockade Efficacy Across Diverse Murine Tumor Models.
Asael Roichman, Gabriela Reyes-Castellanos, Ziqing Chen, Zihong Chen, Sarah J Mitchell, Eric G Pamer

Cancer Res· September 2025

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Modifications of microbiome-derived cell-free RNA in plasma discriminates colorectal cancer samples.
Cheng-Wei Ju, Ruitu Lyu, Han Li, Jiangbo Wei, Alberto J Parra Vitela, Eric Pamer

Nat Biotechnol· July 2025

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Author Correction: Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.
Alexander S Little, Isaac T Younker, Matthew S Schechter, Paola Nol Bernardino, Raphaël Méheust, Eric G Pamer

Nat Microbiol· June 2025

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Fecal metabolite profiling identifies critically ill patients with increased 30-day mortality.
Alexander P de Porto, Nicholas P Dylla, Matthew Stutz, Huaiying Lin, Maryam Khalid, Eric G Pamer

Sci Adv· June 2025

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Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence.
Nguyen T Q Nhu, Huaiying Lin, Ying Pigli, Jonathan K Sia, Pola Kuhn, Eric G Pamer

Cell Rep· June 2025

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Fecal Butyrate and Deoxycholic Acid Concentrations Correlate With Mortality in Patients With Liver Disease.
Matthew A Odenwald, Ramanujam Ramaswamy, Huaiying Lin, Christopher Lehmann, Angelica Moran, Eric G Pamer

Gastro Hep Adv· May 2025

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Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance.
Cody G Cole, Zhenrun J Zhang, Shravan R Dommaraju, Qiwen Dong, Rosemary L Pope, Eric G Pamer

bioRxiv· May 2025

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Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom.
Benjamin A Doran, Robert Y Chen, Hannah Giba, Vivek Behera, Bidisha Barat, Eric G Pamer

Cell Syst· February 2025

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Protection against Clostridioides difficile disease by a naturally avirulent strain.
Qiwen Dong, Stephen Harper, Emma McSpadden, Sophie S Son, Marie-Maude Allen, Eric G Pamer

Cell Host Microbe· January 2025

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Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution.
Zhenrun J Zhang, Cody G Cole, Michael J Coyne, Huaiying Lin, Nicholas Dylla, Eric G Pamer

Cell Host Microbe· October 2024

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Gut microbes fend off harmful bacteria by depriving them of nutrients.
Eric G Pamer

Nature· September 2024

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Flagellar switch inverted repeat impacts flagellar invertibility and varies RT027/MLST1 virulence.
Nguyen T Q Nhu, Huaiying Lin, Ying Pigli, Jonathan K Sia, Pola Kuhn, Eric G Pamer

bioRxiv· September 2024

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Protection against disease by a naturally avirulent strain.
Qiwen Dong, Stephen Harper, Emma McSpadden, Sophie S Son, Marie-Maude Allen, Eric G Pamer

bioRxiv· May 2024

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Intestinal carbapenem-resistant undergoes complex transcriptional reprogramming following immune activation.
Clement David, Aleksander Czauderna, Liqing Cheng, Marion Lagune, Hea-Jin Jung, Eric G Pamer

Gut Microbes· April 2024

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Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species and strain level diversity and evolution.
Zhenrun J Zhang, Cody G Cole, Michael J Coyne, Huaiying Lin, Nicholas Dylla, Eric G Pamer

bioRxiv· March 2024

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Fecal metabolite profiling identifies liver transplant recipients at risk for postoperative infection.
Christopher J Lehmann, Nicholas P Dylla, Matthew Odenwald, Ravi Nayak, Maryam Khalid, Eric G Pamer

Cell Host Microbe· January 2024

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Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration.
Alexander S Little, Isaac T Younker, Matthew S Schechter, Paola Nol Bernardino, Raphaël Méheust, Eric G Pamer

Nat Microbiol· January 2024

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An evolution-based framework for describing human gut bacteria.
Benjamin A Doran, Robert Y Chen, Hannah Giba, Vivek Behera, Bidisha Barat, Eric G Pamer

bioRxiv· December 2023

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Exposure and resistance to lantibiotics impact microbiota composition and function.
Zhenrun J Zhang, Cody Cole, Huaiying Lin, Chunyu Wu, Fidel Haro, Eric G Pamer

bioRxiv· December 2023

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Bifidobacteria metabolize lactulose to optimize gut metabolites and prevent systemic infection in patients with liver disease.
Matthew A Odenwald, Huaiying Lin, Christopher Lehmann, Nicholas P Dylla, Cody G Cole, Eric G Pamer

Nat Microbiol· November 2023

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Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile.
Qiwen Dong, Huaiying Lin, Marie-Maude Allen, Julian R Garneau, Jonathan K Sia, Eric G Pamer

Cell Rep· August 2023

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Reduced immunomodulatory metabolite concentrations in peri-transplant fecal samples from heart allograft recipients.
Mark Dela Cruz, Huaiying Lin, Jiho Han, Emerald Adler, Jaye Boissiere, Eric Pamer

Front Transplant· July 2023

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